A novel tracking and analysis system for time-lapse cellular imaging of Schizosaccharomyces pombe.

IF 1 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Genes & genetic systems Pub Date : 2024-03-26 Epub Date: 2024-02-21 DOI:10.1266/ggs.23-00239
Kei Taniguchi, Takuya Kajitani, Takahito Ayano, Toshiyuki Yoshida, Masaya Oki
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Abstract

The importance of the parent-progeny relationship tracking technique in single-cell analysis has grown with the passage of time. In this study, fundamental image-processing techniques were combined to develop software capable of inferring cell cycle alterations in fission yeast cells, which exhibit equipartition during division. These methods, exclusively relying on bright-field images as input, could track parent-progeny relationships after cell division by assessing the temporal morphological transformation of these cells. In the application of this technique, the software was employed for calculating intracellular fluorescent dots during every stage of the cell cycle, using a yeast strain expressing EGFP-fused Swi6, which binds to chromatin. The results obtained with this software were consistent with those of previous studies. This software facilitated single-cell-level tracking of parent-progeny relationships in cells exhibiting equipartition during division and enabled the monitoring of spatial fluctuations in a cell cycle-dependent protein. This method, expediting the analysis of extensive datasets, may also empower large-scale screening experiments that cannot be conducted manually.

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用于对小鼠裂殖酵母进行延时细胞成像的新型跟踪和分析系统。
随着时间的推移,在单细胞分析中采用亲子关系跟踪技术的意义越来越大。在这项研究中,我们综合运用了基本的图像处理技术,开发出了能够推断分裂酵母在分裂过程中细胞周期变化的软件。这些方法完全依赖于明视野图像作为输入,通过评估这些细胞的时间形态变化,可追踪细胞分裂后的亲子关系。在这项技术的应用中,利用酵母菌株 GFP 融合 Swi6(存在于细胞中并与染色质结合),使用软件计算细胞周期每个阶段的细胞内荧光点。该软件得出的结果与之前的研究结果一致。该软件有助于在单细胞水平上追踪分裂过程中表现出等分的细胞中的亲代-后代关系,并能监测依赖细胞周期的蛋白质的空间波动。这种方法加快了对大量数据集的分析,还可以进行人工无法进行的大规模筛选实验。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Genes & genetic systems
Genes & genetic systems 生物-生化与分子生物学
CiteScore
1.50
自引率
0.00%
发文量
22
审稿时长
>12 weeks
期刊介绍: Genes & Genetic Systems , formerly the Japanese Journal of Genetics , is published bimonthly by the Genetics Society of Japan.
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