Carbon-detected deuterium solid-state NMR rotating frame relaxation measurements for protein methyl groups under magic angle spinning

IF 1.8 3区 化学 Q4 CHEMISTRY, PHYSICAL Solid state nuclear magnetic resonance Pub Date : 2024-02-22 DOI:10.1016/j.ssnmr.2024.101922
Liliya Vugmeyster , Dmitry Ostrovsky , Riqiang Fu
{"title":"Carbon-detected deuterium solid-state NMR rotating frame relaxation measurements for protein methyl groups under magic angle spinning","authors":"Liliya Vugmeyster ,&nbsp;Dmitry Ostrovsky ,&nbsp;Riqiang Fu","doi":"10.1016/j.ssnmr.2024.101922","DOIUrl":null,"url":null,"abstract":"<div><p>Deuterium rotating frame solid-state NMR relaxation measurements (<sup>2</sup>H <span><math><mrow><msub><mi>R</mi><mrow><mn>1</mn><mi>ρ</mi></mrow></msub></mrow></math></span>) are important tools in quantitative studies of molecular dynamics. We demonstrate how <sup>2</sup>H to <sup>13</sup>C cross-polarization (CP) approaches under 10–40 kHz magic angle spinning rates can be combined with the <sup>2</sup>H <span><math><mrow><msub><mi>R</mi><mrow><mn>1</mn><mi>ρ</mi></mrow></msub></mrow></math></span> blocks to allow for extension of deuterium rotating frame relaxation studies to methyl groups in biomolecules. This extension permits detection on the <sup>13</sup>C nuclei and, hence, for the achievement of site-specific resolution. The measurements are demonstrated using a nine-residue low complexity peptide with the sequence GGKGMGFGL, in which a single selective −<sup>13</sup>CD<sub>3</sub> label is placed at the methionine residue. Carbon-detected measurements are compared with the deuterium direct-detection results, which allows for fine-tuning of experimental approaches. In particular, we show how the adiabatic respiration CP scheme and the double adiabatic sweep on the <sup>2</sup>H and <sup>13</sup>C channels can be combined with the <sup>2</sup>H <span><math><mrow><msub><mi>R</mi><mrow><mn>1</mn><mi>ρ</mi></mrow></msub></mrow></math></span> relaxation rates measurement. Off-resonance <sup>2</sup>H <span><math><mrow><msub><mi>R</mi><mrow><mn>1</mn><mi>ρ</mi></mrow></msub></mrow></math></span> measurements are investigated in addition to the on-resonance condition, as they extent the range of effective spin-locking field.</p></div>","PeriodicalId":21937,"journal":{"name":"Solid state nuclear magnetic resonance","volume":"130 ","pages":"Article 101922"},"PeriodicalIF":1.8000,"publicationDate":"2024-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Solid state nuclear magnetic resonance","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0926204024000080","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Deuterium rotating frame solid-state NMR relaxation measurements (2H R1ρ) are important tools in quantitative studies of molecular dynamics. We demonstrate how 2H to 13C cross-polarization (CP) approaches under 10–40 kHz magic angle spinning rates can be combined with the 2H R1ρ blocks to allow for extension of deuterium rotating frame relaxation studies to methyl groups in biomolecules. This extension permits detection on the 13C nuclei and, hence, for the achievement of site-specific resolution. The measurements are demonstrated using a nine-residue low complexity peptide with the sequence GGKGMGFGL, in which a single selective −13CD3 label is placed at the methionine residue. Carbon-detected measurements are compared with the deuterium direct-detection results, which allows for fine-tuning of experimental approaches. In particular, we show how the adiabatic respiration CP scheme and the double adiabatic sweep on the 2H and 13C channels can be combined with the 2H R1ρ relaxation rates measurement. Off-resonance 2H R1ρ measurements are investigated in addition to the on-resonance condition, as they extent the range of effective spin-locking field.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
碳检测氘固态核磁共振旋转框架弛豫测量魔角旋转下的蛋白质甲基基团
氘旋转框架固态核磁共振弛豫测量(2H R1ρ)是分子动力学定量研究的重要工具。我们展示了如何将 10-40 kHz 魔角旋转速率下的 2H 至 13C 交叉极化 (CP) 方法与 2H R1ρ 块相结合,从而将氘旋转框架弛豫研究扩展到生物大分子中的甲基。这种扩展允许对 13C 核进行检测,从而实现特定位点的分辨率。我们使用序列为 GGKGMGFGL 的九个残基低复杂性肽进行了测量演示,其中在蛋氨酸残基上放置了单个选择性 -13CD3 标签。我们将碳检测测量结果与氘直接检测结果进行了比较,从而对实验方法进行了微调。特别是,我们展示了绝热呼吸 CP 方案和 2H 与 13C 通道双绝热扫描如何与 2H R1ρ 松弛率测量相结合。除了共振条件之外,我们还研究了非共振 2H R1ρ 测量,因为它们扩大了有效自旋锁定场的范围。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
CiteScore
5.30
自引率
9.40%
发文量
42
审稿时长
72 days
期刊介绍: The journal Solid State Nuclear Magnetic Resonance publishes original manuscripts of high scientific quality dealing with all experimental and theoretical aspects of solid state NMR. This includes advances in instrumentation, development of new experimental techniques and methodology, new theoretical insights, new data processing and simulation methods, and original applications of established or novel methods to scientific problems.
期刊最新文献
Applications of NMR based methodologies investigating the behavior of lignin and cellulose towards bio-based carbon fibers production 17O NMR relaxation measurements for investigation of molecular dynamics in static solids using sodium nitrate as a model compound Solid-state NMR compositional analysis of sputum from people with cystic fibrosis Elucidating structure and metabolism of insect biomaterials by solid-state NMR Glucose hydrochar consists of linked phenol, furan, arene, alkyl, and ketone structures revealed by advanced solid-state nuclear magnetic resonance
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1