Identification of new hub- ferroptosis-related genes in Lupus Nephritis.

IF 3.3 4区 医学 Q3 IMMUNOLOGY Autoimmunity Pub Date : 2024-12-01 Epub Date: 2024-02-26 DOI:10.1080/08916934.2024.2319204
Xiao-Jie Zheng, Ying Chen, Li Yao, Xiao-Li Li, Da Sun, Yan-Qiu Li
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Abstract

Background: Lupus Nephritis (LN) is the primary causation of kidney injury in systemic lupus erythematosus (SLE). Ferroptosis is a programmed cell death. Therefore, understanding the crosstalk between LN and ferroptosis is still a significant challenge. Methods: We obtained the expression profile of LN kidney biopsy samples from the Gene Expression Omnibus database and utilised the R-project software to identify differentially expressed genes (DEGs). Then, we conducted a functional correlation analysis. Ferroptosis-related genes (FRGs) and differentially expressed genes (DEGs) crossover to select FRGs with LN. Afterwards, we used CIBERSORT to assess the infiltration of immune cells in both LN tissues and healthy control samples. Finally, we performed immunohistochemistry on LN human renal tissue. Results: 10619 DEGs screened from the LN biopsy tissue were identified. 22 hub-ferroptosis-related genes with LN (FRGs-LN) were screened out. The CIBERSORT findings revealed that there were significant statistical differences in immune cells between healthy control samples and LN tissues. Immunohistochemistry further demonstrated a significant difference in HRAS, TFRC, ATM, and SRC expression in renal tissue between normal and control groups. Conclusion: We developed a signature that allowed us to identify 22 new biomarkers associated with FRGs-LN. These findings suggest new insights into the pathology and therapeutic potential of LN ferroptosis inhibitors and iron chelators.

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鉴定狼疮性肾炎中新的枢纽型铁变态反应相关基因
背景:狼疮性肾炎(LN狼疮性肾炎(LN)是系统性红斑狼疮(SLE)肾损伤的主要原因。铁变态反应是一种程序性细胞死亡。因此,了解 LN 与铁变态反应之间的相互关系仍是一项重大挑战。研究方法我们从基因表达总库(Gene Expression Omnibus)数据库中获取了LN肾活检样本的表达谱,并利用R-project软件识别了差异表达基因(DEGs)。然后,我们进行了功能相关性分析。铁突变相关基因(FRGs)和差异表达基因(DEGs)交叉选择出与 LN 相关的 FRGs。随后,我们使用 CIBERSORT 评估了 LN 组织和健康对照样本中免疫细胞的浸润情况。最后,我们对 LN 人肾组织进行了免疫组化。结果从 LN 活检组织中筛选出 10619 个 DEGs。筛选出了 22 个与 LN 相关的中枢铁蛋白沉积相关基因(FRGs-LN)。CIBERSORT 研究结果显示,健康对照样本和 LN 组织的免疫细胞存在显著的统计学差异。免疫组化进一步表明,正常组和对照组肾组织中 HRAS、TFRC、ATM 和 SRC 的表达存在显著差异。结论我们建立了一个特征,从而确定了与 FRGs-LN 相关的 22 个新生物标记物。这些发现表明,我们对 LN 铁突变抑制剂和铁螯合剂的病理和治疗潜力有了新的认识。
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来源期刊
Autoimmunity
Autoimmunity 医学-免疫学
CiteScore
5.70
自引率
8.60%
发文量
59
审稿时长
6-12 weeks
期刊介绍: Autoimmunity is an international, peer reviewed journal that publishes articles on cell and molecular immunology, immunogenetics, molecular biology and autoimmunity. Current understanding of immunity and autoimmunity is being furthered by the progress in new molecular sciences that has recently been little short of spectacular. In addition to the basic elements and mechanisms of the immune system, Autoimmunity is interested in the cellular and molecular processes associated with systemic lupus erythematosus, rheumatoid arthritis, Sjogren syndrome, type I diabetes, multiple sclerosis and other systemic and organ-specific autoimmune disorders. The journal reflects the immunology areas where scientific progress is most rapid. It is a valuable tool to basic and translational researchers in cell biology, genetics and molecular biology of immunity and autoimmunity.
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