Daniel J. VandenHeuvel, Pascal R. Buenzli, Matthew J. Simpson
{"title":"Pushing coarse-grained models beyond the continuum limit using equation learning","authors":"Daniel J. VandenHeuvel, Pascal R. Buenzli, Matthew J. Simpson","doi":"10.1098/rspa.2023.0619","DOIUrl":null,"url":null,"abstract":"Mathematical modelling of biological population dynamics often involves proposing high-fidelity discrete agent-based models that capture stochasticity and individual-level processes. These models are often considered in conjunction with an approximate coarse-grained differential equation that captures population-level features only. These coarse-grained models are only accurate in certain asymptotic parameter regimes, such as enforcing that the time scale of individual motility far exceeds the time scale of birth/death processes. When these coarse-grained models are accurate, the discrete model still abides by conservation laws at the microscopic level, which implies that there is some macroscopic conservation law that can describe the macroscopic dynamics. In this work, we introduce an equation learning framework to find accurate coarse-grained models when standard continuum limit approaches are inaccurate. We demonstrate our approach using a discrete mechanical model of epithelial tissues, considering a series of four case studies that consider problems with and without free boundaries, and with and without proliferation, illustrating how we can learn macroscopic equations describing mechanical relaxation, cell proliferation, and the equation governing the dynamics of the free boundary of the tissue. While our presentation focuses on this biological application, our approach is more broadly applicable across a range of scenarios where discrete models are approximated by approximate continuum-limit descriptions.","PeriodicalId":20716,"journal":{"name":"Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences","volume":null,"pages":null},"PeriodicalIF":2.9000,"publicationDate":"2024-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences","FirstCategoryId":"103","ListUrlMain":"https://doi.org/10.1098/rspa.2023.0619","RegionNum":3,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
引用次数: 0
Abstract
Mathematical modelling of biological population dynamics often involves proposing high-fidelity discrete agent-based models that capture stochasticity and individual-level processes. These models are often considered in conjunction with an approximate coarse-grained differential equation that captures population-level features only. These coarse-grained models are only accurate in certain asymptotic parameter regimes, such as enforcing that the time scale of individual motility far exceeds the time scale of birth/death processes. When these coarse-grained models are accurate, the discrete model still abides by conservation laws at the microscopic level, which implies that there is some macroscopic conservation law that can describe the macroscopic dynamics. In this work, we introduce an equation learning framework to find accurate coarse-grained models when standard continuum limit approaches are inaccurate. We demonstrate our approach using a discrete mechanical model of epithelial tissues, considering a series of four case studies that consider problems with and without free boundaries, and with and without proliferation, illustrating how we can learn macroscopic equations describing mechanical relaxation, cell proliferation, and the equation governing the dynamics of the free boundary of the tissue. While our presentation focuses on this biological application, our approach is more broadly applicable across a range of scenarios where discrete models are approximated by approximate continuum-limit descriptions.
期刊介绍:
Proceedings A has an illustrious history of publishing pioneering and influential research articles across the entire range of the physical and mathematical sciences. These have included Maxwell"s electromagnetic theory, the Braggs" first account of X-ray crystallography, Dirac"s relativistic theory of the electron, and Watson and Crick"s detailed description of the structure of DNA.