Multiomics data identifies RSPO2 as a prognostic biomarker in human tumors associated with pan-cancer.

3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Advances in protein chemistry and structural biology Pub Date : 2024-01-01 Epub Date: 2024-02-17 DOI:10.1016/bs.apcsb.2023.11.011
Ankit Srivastava, Sameer Srivastava
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Abstract

RSPO2 protein may provide valuable insights into the mechanism underlying various types of tumorigenesis. The role of RSPO2 in pan-cancer has not been reported so far. Therefore, this study aimed to provide a comprehensive analysis of RSPO2 from a pan-cancer perspective employing multiomics data. The expression profile and function of RSPO2 across different tumors were investigated using various web-based tools UALCAN, GEPIA, TIMER, Human Protein Atlas, cBioPortal, TISIDB, STRING, and Metascape to interpret the expression profile, promoter methylation status, genomic alterations, survival analysis, protein-protein interaction, correlation with immune cell subtypes, tumor immune microenvironment and enrichment analysis. Comprehensive pan-cancer analysis indicated that RSPO2 was significantly downregulated in eleven and upregulated in five tumor types compared to normal tissues, validation results further suggest RSPO2 was downregulated in most of the tumors. The protein level expression of RSPO2 was mostly low in malignant tissues. We found that RSPO2 was significantly related to individual pathological stages in BLCA, COAD, LUAD and LUSC. Prognostic analysis indicates that the high RSPO2 expression was significantly correlated with the poor prognosis in BRCA, KICH, KIRP, READ, and UCES. Furthermore, RSPO2 is frequently amplified, exhibits hypermethylated promoter in most cancers, and is associated with immune subtypes, molecular subtypes and immune cell infiltration. Finally, enrichment analysis showed that RSPO2 is involved in the regulation of the canonical Wnt pathway and neuronal development. The overall comprehensive pan-cancer analysis affirms that RSPO2 could be a promising diagnostic and prognostic biomarker and latent therapy target in the future.

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多组学数据发现 RSPO2 是与泛癌症相关的人类肿瘤的预后生物标记物。
RSPO2 蛋白可为了解各种类型肿瘤发生的机制提供有价值的信息。迄今为止,RSPO2 在泛癌症中的作用尚未见报道。因此,本研究旨在利用多组学数据,从泛癌角度对RSPO2进行全面分析。研究人员利用 UALCAN、GEPIA、TIMER、Human Protein Atlas、cBioPortal、TISIDB、STRING 和 Metascape 等多种网络工具对 RSPO2 在不同肿瘤中的表达谱和功能进行了研究,以解读其表达谱、启动子甲基化状态、基因组改变、生存分析、蛋白-蛋白相互作用、与免疫细胞亚型的相关性、肿瘤免疫微环境和富集分析。泛癌综合分析表明,与正常组织相比,RSPO2在11种肿瘤中明显下调,在5种肿瘤中明显上调。在恶性肿瘤组织中,RSPO2 的蛋白水平表达很低。我们发现,在 BLCA、COAD、LUAD 和 LUSC 中,RSPO2 与各病理分期显著相关。预后分析表明,在 BRCA、KICH、KIRP、READ 和 UCES 中,RSPO2 的高表达与预后不良明显相关。此外,在大多数癌症中,RSPO2经常扩增,启动子呈现高甲基化,并与免疫亚型、分子亚型和免疫细胞浸润相关。最后,富集分析表明,RSPO2 参与了典型 Wnt 通路和神经元发育的调控。全面的泛癌症分析证实,RSPO2 在未来可能成为一种有前景的诊断和预后生物标记物以及潜在的治疗靶点。
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来源期刊
Advances in protein chemistry and structural biology
Advances in protein chemistry and structural biology BIOCHEMISTRY & MOLECULAR BIOLOGY-
CiteScore
7.40
自引率
0.00%
发文量
66
审稿时长
>12 weeks
期刊介绍: Published continuously since 1944, The Advances in Protein Chemistry and Structural Biology series has been the essential resource for protein chemists. Each volume brings forth new information about protocols and analysis of proteins. Each thematically organized volume is guest edited by leading experts in a broad range of protein-related topics.
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