Learning vs. understanding: When does artificial intelligence outperform process-based modeling in soil organic carbon prediction?

IF 4.5 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS New biotechnology Pub Date : 2024-03-08 DOI:10.1016/j.nbt.2024.03.001
Luca G. Bernardini , Christoph Rosinger , Gernot Bodner , Katharina M. Keiblinger , Emma Izquierdo-Verdiguier , Heide Spiegel , Carl O. Retzlaff , Andreas Holzinger
{"title":"Learning vs. understanding: When does artificial intelligence outperform process-based modeling in soil organic carbon prediction?","authors":"Luca G. Bernardini ,&nbsp;Christoph Rosinger ,&nbsp;Gernot Bodner ,&nbsp;Katharina M. Keiblinger ,&nbsp;Emma Izquierdo-Verdiguier ,&nbsp;Heide Spiegel ,&nbsp;Carl O. Retzlaff ,&nbsp;Andreas Holzinger","doi":"10.1016/j.nbt.2024.03.001","DOIUrl":null,"url":null,"abstract":"<div><p>In recent years, machine learning (ML) algorithms have gained substantial recognition for ecological modeling across various temporal and spatial scales. However, little evaluation has been conducted for the prediction of soil organic carbon (SOC) on small data sets commonly inherent to long-term soil ecological research. In this context, the performance of ML algorithms for SOC prediction has never been tested against traditional process-based modeling approaches. Here, we compare ML algorithms, calibrated and uncalibrated process-based models as well as multiple ensembles on their performance in predicting SOC using data from five long-term experimental sites (comprising 256 independent data points) in Austria. Using all available data, the ML-based approaches using Random forest and Support vector machines with a polynomial kernel were superior to all process-based models. However, the ML algorithms performed similar or worse when the number of training samples was reduced or when a leave-one-site-out cross validation was applied. This emphasizes that the performance of ML algorithms is strongly dependent on the data-size related quality of learning information following the well-known curse of dimensionality phenomenon, while the accuracy of process-based models significantly relies on proper calibration and combination of different modeling approaches. Our study thus suggests a superiority of ML-based SOC prediction at scales where larger datasets are available, while process-based models are superior tools when targeting the exploration of underlying biophysical and biochemical mechanisms of SOC dynamics in soils. Therefore, we recommend applying ensembles of ML algorithms with process-based models to combine advantages inherent to both approaches.</p></div>","PeriodicalId":19190,"journal":{"name":"New biotechnology","volume":"81 ","pages":"Pages 20-31"},"PeriodicalIF":4.5000,"publicationDate":"2024-03-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1871678424000086/pdfft?md5=63bda49e4bb9729283361b81ea4e3f0f&pid=1-s2.0-S1871678424000086-main.pdf","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"New biotechnology","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1871678424000086","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

Abstract

In recent years, machine learning (ML) algorithms have gained substantial recognition for ecological modeling across various temporal and spatial scales. However, little evaluation has been conducted for the prediction of soil organic carbon (SOC) on small data sets commonly inherent to long-term soil ecological research. In this context, the performance of ML algorithms for SOC prediction has never been tested against traditional process-based modeling approaches. Here, we compare ML algorithms, calibrated and uncalibrated process-based models as well as multiple ensembles on their performance in predicting SOC using data from five long-term experimental sites (comprising 256 independent data points) in Austria. Using all available data, the ML-based approaches using Random forest and Support vector machines with a polynomial kernel were superior to all process-based models. However, the ML algorithms performed similar or worse when the number of training samples was reduced or when a leave-one-site-out cross validation was applied. This emphasizes that the performance of ML algorithms is strongly dependent on the data-size related quality of learning information following the well-known curse of dimensionality phenomenon, while the accuracy of process-based models significantly relies on proper calibration and combination of different modeling approaches. Our study thus suggests a superiority of ML-based SOC prediction at scales where larger datasets are available, while process-based models are superior tools when targeting the exploration of underlying biophysical and biochemical mechanisms of SOC dynamics in soils. Therefore, we recommend applying ensembles of ML algorithms with process-based models to combine advantages inherent to both approaches.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
学习与理解:在土壤有机碳预测中,人工智能何时才能胜过基于过程的建模?
近年来,机器学习(ML)算法在各种时空尺度的生态建模中获得了广泛认可。然而,对于长期土壤生态研究中常见的小型数据集上的土壤有机碳(SOC)预测,却很少进行评估。在这种情况下,用于 SOC 预测的 ML 算法的性能从未与传统的基于过程的建模方法进行过对比测试。在此,我们利用奥地利五个长期实验点的数据(包括 256 个独立数据点),比较了 ML 算法、校准和未校准的基于过程的模型以及多个集合在预测 SOC 方面的性能。在使用所有可用数据的情况下,使用随机森林和多项式内核支持向量机的基于 ML 的方法优于所有基于过程的模型。然而,当训练样本数量减少或采用 "一地不进 "交叉验证时,ML 算法的性能相近或更差。这突出表明,根据众所周知的 "维度诅咒 "现象,ML 算法的性能在很大程度上取决于与数据大小相关的学习信息质量,而基于过程的模型的准确性则在很大程度上依赖于适当的校准和不同建模方法的组合。因此,我们的研究表明,在有较大数据集的情况下,基于 ML 的 SOC 预测更有优势,而在探索土壤中 SOC 动态的生物物理和生物化学机制时,基于过程的模型则是更好的工具。因此,我们建议将 ML 算法集合与基于过程的模型相结合,以综合两种方法的固有优势。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
New biotechnology
New biotechnology 生物-生化研究方法
CiteScore
11.40
自引率
1.90%
发文量
77
审稿时长
1 months
期刊介绍: New Biotechnology is the official journal of the European Federation of Biotechnology (EFB) and is published bimonthly. It covers both the science of biotechnology and its surrounding political, business and financial milieu. The journal publishes peer-reviewed basic research papers, authoritative reviews, feature articles and opinions in all areas of biotechnology. It reflects the full diversity of current biotechnology science, particularly those advances in research and practice that open opportunities for exploitation of knowledge, commercially or otherwise, together with news, discussion and comment on broader issues of general interest and concern. The outlook is fully international. The scope of the journal includes the research, industrial and commercial aspects of biotechnology, in areas such as: Healthcare and Pharmaceuticals; Food and Agriculture; Biofuels; Genetic Engineering and Molecular Biology; Genomics and Synthetic Biology; Nanotechnology; Environment and Biodiversity; Biocatalysis; Bioremediation; Process engineering.
期刊最新文献
Applicability of a laccase from the eucalypt wood endophytic fungus Hormonema sp. CECT-13092 for advanced bioethanol production Utilization of lactose and whey permeate for the sustainable production of polyhydroxyalkanoates by Hydrogenophaga pseudoflava DSM1034. From the lab to the field and closer to the market: Production of the biopolymer cyanophycin in plants Microalgal biorefineries in sustainable biofuel production and other high-value products Microfluidic method for rapidly determining the protein and lipid yield of microalgae
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1