Predicting the Efficacy of Novel Synthetic Compounds in the Treatment of Osteosarcoma via Anti-Receptor Activator of Nuclear Factor-κB Ligand (RANKL)/Receptor Activator of Nuclear Factor-κB (RANK) Targets.

IF 1.9 4区 医学 Q3 CHEMISTRY, MEDICINAL Medicinal Chemistry Pub Date : 2024-01-01 DOI:10.2174/0115734064287922240222115200
Wenhua Zhang, Siping Xu, Peng Liu, Xusheng Li, Xinyuan Yu, Bing Kang
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Abstract

Background: Osteosarcoma (OS) currently demonstrates a rising incidence, ranking as the predominant primary malignant tumor in the adolescent demographic. Notwithstanding this trend, the pharmaceutical landscape lacks therapeutic agents that deliver satisfactory efficacy against OS.

Objective: This study aimed to authenticate the outcomes of prior research employing the HM and GEP algorithms, endeavoring to expedite the formulation of efficacious therapeutics for osteosarcoma.

Methods: A robust quantitative constitutive relationship model was engineered to prognosticate the IC50 values of innovative synthetic compounds, harnessing the power of gene expression programming. A total of 39 natural products underwent optimization via heuristic methodologies within the CODESSA software, resulting in the establishment of a linear model. Subsequent to this phase, a mere quintet of descriptors was curated for the generation of non-linear models through gene expression programming.

Results: The squared correlation coefficients and s2 values derived from the heuristics stood at 0.5516 and 0.0195, respectively. Gene expression programming yielded squared correlation coefficients and mean square errors for the training set at 0.78 and 0.0085, respectively. For the test set, these values were determined to be 0.71 and 0.0121, respectively. The s2 of the heuristics for the training set was discerned to be 0.0085.

Conclusion: The analytic scrutiny of both algorithms underscores their commendable reliability in forecasting the efficacy of nascent compounds. A juxtaposition based on correlation coefficients elucidates that the GEP algorithm exhibits superior predictive prowess relative to the HM algorithm for novel synthetic compounds.

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通过抗核因子κB受体激活剂配体(RANKL)/核因子κB受体激活剂(RANK)靶点预测新型合成化合物治疗骨肉瘤的疗效。
背景:骨肉瘤(Osteosarcoma,OS)目前的发病率呈上升趋势,是青少年人群中最主要的原发性恶性肿瘤。尽管有这一趋势,但医药领域仍缺乏对骨肉瘤有满意疗效的治疗药物:本研究旨在验证之前采用 HM 和 GEP 算法的研究成果,以加快骨肉瘤有效治疗药物的研发:方法:利用基因表达编程的力量,设计了一个稳健的定量构效关系模型来预测创新合成化合物的 IC50 值。通过 CODESSA 软件中的启发式方法,共对 39 种天然产品进行了优化,最终建立了一个线性模型。在这一阶段之后,通过基因表达编程,仅对五种描述因子进行了策划,以生成非线性模型:结果:启发式方法得出的平方相关系数和 s2 值分别为 0.5516 和 0.0195。基因表达编程得出的训练集相关系数平方和均方误差分别为 0.78 和 0.0085。测试集的相关系数平方和均方误差分别为 0.78 和 0.0085,测试集的相关系数平方和均方误差分别为 0.71 和 0.0121。启发式方法在训练集上的 s2 为 0.0085:对这两种算法的分析研究表明,它们在预测新化合物的疗效方面具有值得称道的可靠性。基于相关系数的并列分析表明,相对于 HM 算法,GEP 算法对新型合成化合物的预测能力更强。
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来源期刊
Medicinal Chemistry
Medicinal Chemistry 医学-医药化学
CiteScore
4.30
自引率
4.30%
发文量
109
审稿时长
12 months
期刊介绍: Aims & Scope Medicinal Chemistry a peer-reviewed journal, aims to cover all the latest outstanding developments in medicinal chemistry and rational drug design. The journal publishes original research, mini-review articles and guest edited thematic issues covering recent research and developments in the field. Articles are published rapidly by taking full advantage of Internet technology for both the submission and peer review of manuscripts. Medicinal Chemistry is an essential journal for all involved in drug design and discovery.
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