A simple 1H (12C/13C) filtered experiment to quantify and trace isotope enrichment in complex environmental and biological samples

IF 2 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Journal of magnetic resonance Pub Date : 2024-02-29 DOI:10.1016/j.jmr.2024.107653
Katrina Steiner , Wolfgang Bermel , Ronald Soong , Daniel H. Lysak , Amy Jenne , Katelyn Downey , William W. Wolff , Peter M. Costa , Kiera Ronda , Vincent Moxley-Paquette , Jacob Pellizzari , Andre J. Simpson
{"title":"A simple 1H (12C/13C) filtered experiment to quantify and trace isotope enrichment in complex environmental and biological samples","authors":"Katrina Steiner ,&nbsp;Wolfgang Bermel ,&nbsp;Ronald Soong ,&nbsp;Daniel H. Lysak ,&nbsp;Amy Jenne ,&nbsp;Katelyn Downey ,&nbsp;William W. Wolff ,&nbsp;Peter M. Costa ,&nbsp;Kiera Ronda ,&nbsp;Vincent Moxley-Paquette ,&nbsp;Jacob Pellizzari ,&nbsp;Andre J. Simpson","doi":"10.1016/j.jmr.2024.107653","DOIUrl":null,"url":null,"abstract":"<div><p>Nuclear magnetic resonance (NMR) based <sup>13</sup>C tracing has broad applications across medical and environmental research. As many biological and environmental samples are heterogeneous, they experience considerable spectral overlap and relatively low signal. Here a 1D <sup>1</sup>H–<sup>12</sup>C/<sup>13</sup>C is introduced that uses “in-phase/opposite-phase” encoding to simultaneously detect and discriminate both protons attached to <sup>12</sup>C and <sup>13</sup>C at full <sup>1</sup>H sensitivity in every scan. Unlike traditional approaches that focus on the <sup>12</sup>C/<sup>13</sup>C satellite ratios in a <sup>1</sup>H spectrum, this approach creates separate sub-spectra for the <sup>12</sup>C and <sup>13</sup>C bound protons. These spectra can be used for both quantitative and qualitative analysis of complex samples with significant spectral overlap. Due to the presence of the <sup>13</sup>C dipole, faster relaxation of the <sup>1</sup>H–<sup>13</sup>C pairs results in slight underestimation compared to the <sup>1</sup>H–<sup>12</sup>C pairs. However, this is easily compensated for, by collecting an additional reference spectrum, from which the absolute percentage of <sup>13</sup>C can be calculated by difference. When combined with the result, <sup>12</sup>C and <sup>13</sup>C percent enrichment in both <sup>1</sup>H–<sup>12</sup>C and <sup>1</sup>H–<sup>13</sup>C fractions are obtained. As the approach uses isotope filtered <sup>1</sup>H NMR for detection, it retains nearly the same sensitivity as a standard <sup>1</sup>H spectrum. Here, a proof-of-concept is performed using simple mixtures of <sup>12</sup>C and <sup>13</sup>C glucose, followed by suspended algal cells with varying <sup>12</sup>C /<sup>13</sup>C ratios representing a complex mixture. The results consistently return <sup>12</sup>C/<sup>13</sup>C ratios that deviate less than 1 % on average from the expected. Finally, the sequence was used to monitor and quantify <sup>13</sup>C% enrichment in <em>Daphnia magna</em> neonates which were fed a <sup>13</sup>C diet over 1 week. The approach helped reveal how the organisms utilized the <sup>12</sup>C lipids they are born with vs. the <sup>13</sup>C lipids they assimilate from their diet during growth. Given the experiments simplicity, versatility, and sensitivity, we anticipate it should find broad application in a wide range of tracer studies, such as fluxomics, with applications spanning various disciplines.</p></div>","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"361 ","pages":"Article 107653"},"PeriodicalIF":2.0000,"publicationDate":"2024-02-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1090780724000375/pdfft?md5=136568fdc7e8212556005d4d32e40998&pid=1-s2.0-S1090780724000375-main.pdf","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of magnetic resonance","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1090780724000375","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

Abstract

Nuclear magnetic resonance (NMR) based 13C tracing has broad applications across medical and environmental research. As many biological and environmental samples are heterogeneous, they experience considerable spectral overlap and relatively low signal. Here a 1D 1H–12C/13C is introduced that uses “in-phase/opposite-phase” encoding to simultaneously detect and discriminate both protons attached to 12C and 13C at full 1H sensitivity in every scan. Unlike traditional approaches that focus on the 12C/13C satellite ratios in a 1H spectrum, this approach creates separate sub-spectra for the 12C and 13C bound protons. These spectra can be used for both quantitative and qualitative analysis of complex samples with significant spectral overlap. Due to the presence of the 13C dipole, faster relaxation of the 1H–13C pairs results in slight underestimation compared to the 1H–12C pairs. However, this is easily compensated for, by collecting an additional reference spectrum, from which the absolute percentage of 13C can be calculated by difference. When combined with the result, 12C and 13C percent enrichment in both 1H–12C and 1H–13C fractions are obtained. As the approach uses isotope filtered 1H NMR for detection, it retains nearly the same sensitivity as a standard 1H spectrum. Here, a proof-of-concept is performed using simple mixtures of 12C and 13C glucose, followed by suspended algal cells with varying 12C /13C ratios representing a complex mixture. The results consistently return 12C/13C ratios that deviate less than 1 % on average from the expected. Finally, the sequence was used to monitor and quantify 13C% enrichment in Daphnia magna neonates which were fed a 13C diet over 1 week. The approach helped reveal how the organisms utilized the 12C lipids they are born with vs. the 13C lipids they assimilate from their diet during growth. Given the experiments simplicity, versatility, and sensitivity, we anticipate it should find broad application in a wide range of tracer studies, such as fluxomics, with applications spanning various disciplines.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
用简单的 1H(12C/13C)过滤实验来量化和追踪复杂环境和生物样本中的同位素富集情况
基于核磁共振(NMR)的 13C 追踪技术在医学和环境研究领域有着广泛的应用。由于许多生物和环境样本都是异质的,因此会出现大量光谱重叠和相对较低的信号。这里介绍的 1D 1H-12C/13C 采用 "同相/异相 "编码,可在每次扫描中以全 1H 灵敏度同时检测和区分 12C 和 13C 上的质子。传统方法侧重于 1H 光谱中的 12C/13C 卫星比率,与之不同的是,这种方法为 12C 和 13C 结合质子创建了单独的子光谱。这些光谱可用于对具有明显光谱重叠的复杂样品进行定量和定性分析。由于 13C 偶极子的存在,与 1H-12C 对相比,1H-13C 对的弛豫速度更快,因此会造成轻微的低估。不过,这一点很容易弥补,只需收集一个额外的参考光谱,就可以通过差值计算出 13C 的绝对百分比。将这一结果与 1H-12C 和 1H-13C 分数中的 12C 和 13C 百分富集度结合起来,就可以得到 12C 和 13C 百分富集度。由于该方法使用同位素滤波 1H NMR 进行检测,因此其灵敏度几乎与标准 1H 光谱相同。在此,我们使用简单的 12C 和 13C 葡萄糖混合物进行了概念验证,然后使用代表复杂混合物的不同 12C /13C 比率的悬浮藻类细胞进行了验证。结果显示,12C/13C 比率与预期比率的平均偏差小于 1%。最后,该序列被用于监测和量化以 13C 食物喂养 1 周的大型水蚤新生儿的 13C 富集度。该方法有助于揭示生物是如何利用其出生时的 12C 脂类与生长过程中从食物中吸收的 13C 脂类的。鉴于该实验的简便性、多功能性和灵敏度,我们预计它将广泛应用于各种示踪剂研究,如通量组学,其应用范围横跨各个学科。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
CiteScore
3.80
自引率
13.60%
发文量
150
审稿时长
69 days
期刊介绍: The Journal of Magnetic Resonance presents original technical and scientific papers in all aspects of magnetic resonance, including nuclear magnetic resonance spectroscopy (NMR) of solids and liquids, electron spin/paramagnetic resonance (EPR), in vivo magnetic resonance imaging (MRI) and spectroscopy (MRS), nuclear quadrupole resonance (NQR) and magnetic resonance phenomena at nearly zero fields or in combination with optics. The Journal''s main aims include deepening the physical principles underlying all these spectroscopies, publishing significant theoretical and experimental results leading to spectral and spatial progress in these areas, and opening new MR-based applications in chemistry, biology and medicine. The Journal also seeks descriptions of novel apparatuses, new experimental protocols, and new procedures of data analysis and interpretation - including computational and quantum-mechanical methods - capable of advancing MR spectroscopy and imaging.
期刊最新文献
A compact and mobile stray-field NMR sensor Eliminating electromagnetic interference for RF shielding-free MRI via k-space convolution: Insights from MR parallel imaging advances Optimizing EPR pulses for broadband excitation and refocusing Proton hyperfine couplings and Overhauser DNP 16-channel sleeve antenna array based on passive decoupling method at 14 T
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1