QSPR for the prediction of critical micelle concentration of different classes of surfactants using machine learning algorithms

IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Journal of molecular graphics & modelling Pub Date : 2024-03-11 DOI:10.1016/j.jmgm.2024.108757
Nada Boukelkal, Soufiane Rahal, Redha Rebhi, Mabrouk Hamadache
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Abstract

The determination of the critical micelle concentration (CMC) is a crucial factor when evaluating surfactants, making it an essential tool in studying the properties of surfactants in various industrial fields. In this present research, we assembled a comprehensive set of 593 different classes of surfactants including, anionic, cationic, nonionic, zwitterionic, and Gemini surfactants to establish a link between their molecular structure and the negative logarithmic value of critical micelle concentration (pCMC) utilizing quantitative structure-property relationship (QSPR) methodologies. Statistical analysis revealed that a set of 14 significant Mordred descriptors (SlogP, GATS6d, nAcid, GATS8dv, GATS4dv, PEOE_VSA11, GATS8d, ATS0p, GATS1d, MATS5p, GATS3d, NdssC, GATS6dv and EState_VSA4), along with temperature, served as appropriate inputs. Different machine learning methods, such as multiple linear regression (MLR), random forest regression (RFR), artificial neural network (ANN), and support vector regression (SVM), were employed in this study to build QSPR models. According to the statistical coefficients of QSPR models, SVR with Dragonfly hyperparameter optimization (SVR-DA) was the most accurate in predicting pCMC values, achieving (R2 = 0.9740, Q2 = 0.9739, rm2 = 0.9627, and Δrm2 = 0.0244) for the entire dataset.

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利用机器学习算法预测不同类别表面活性剂临界胶束浓度的 QSPR
临界胶束浓度(CMC)的测定是评估表面活性剂的一个关键因素,也是研究各种工业领域表面活性剂特性的重要工具。在本研究中,我们汇集了 593 种不同类别的表面活性剂,包括阴离子、阳离子、非离子、齐瓦离子和双子表面活性剂,利用定量结构-性能关系(QSPR)方法,建立了它们的分子结构与临界胶束浓度负对数值(pCMC)之间的联系。统计分析显示,一组 14 个重要的 Mordred 描述因子(SlogP、GATS6d、nAcid、GATS8dv、GATS4dv、PEOE_VSA11、GATS8d、ATS0p、GATS1d、MATS5p、GATS3d、NdssC、GATS6dv 和 EState_VSA4)以及温度可作为适当的输入。本研究采用了不同的机器学习方法,如多元线性回归(MLR)、随机森林回归(RFR)、人工神经网络(ANN)和支持向量回归(SVM),来建立 QSPR 模型。根据 QSPR 模型的统计系数,采用蜻蜓超参数优化的 SVR(SVR-DA)在预测 pCMC 值方面最为准确,对整个数据集的预测结果分别为(= 0.9740、= 0.9739、= 0.9627 和 = 0.0244)。
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来源期刊
Journal of molecular graphics & modelling
Journal of molecular graphics & modelling 生物-计算机:跨学科应用
CiteScore
5.50
自引率
6.90%
发文量
216
审稿时长
35 days
期刊介绍: The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design. As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.
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