Global Distribution and Diversity of Marine Parmales.

IF 2.1 4区 环境科学与生态学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Microbes and Environments Pub Date : 2024-01-01 DOI:10.1264/jsme2.ME23093
Hiroki Ban, Hisashi Endo, Akira Kuwata, Hiroyuki Ogata
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Abstract

Parmales (Bolidophyceae) is a minor eukaryotic phytoplankton group, sister to diatoms, which exists as two distinct forms of unicellular organisms: silicified cells and naked flagellates. Since their discovery, many field studies on Parmales have been performed; however, their global distribution has not yet been examined in detail. We herein compiled more than 3,000 marine DNA metabarcoding datasets targeting the V4 region of the 18S rRNA gene from the EukBank database. By linking this large dataset with the latest morphological and genetic information, we provide updated estimates on the diversity and distribution of Parmales in the global ocean at a fine taxonomic resolution. Parmalean amplicon sequence variants (ASVs) were detected in nearly 90% of the samples analyzed. However, the relative abundance of parmaleans in the eukaryotic community was less than 0.2% on average, and the estimated true richness of parmalean ASVs was approximately 316 ASVs, confirming their low abundance and diversity. A phylogenetic ana-lysis divided these algae into four clades, and three known morphotypes of silicified cells were classified into three different clades. The abundance of Parmales is generally high in the poles and decreases towards the tropics, and individual clades/subclades show further distinctions in their distribution. Collectively, the present results suggest clade/subclade-specific adaptation to different ecological niches.

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海洋豚鼠的全球分布和多样性。
硅藻门(Bolidophyceae)是一种小型真核浮游植物,是硅藻的姊妹类,以两种不同的单细胞生物形式存在:硅化细胞和裸鞭毛藻。自发现以来,人们已对 Parmales 进行了许多实地研究,但尚未对其全球分布进行详细研究。在此,我们从 EukBank 数据库中汇编了 3000 多个以 18S rRNA 基因 V4 区域为目标的海洋 DNA 代谢编码数据集。通过将这一大型数据集与最新的形态学和遗传学信息联系起来,我们以精细的分类学分辨率提供了对全球海洋中帕马鱼的多样性和分布的最新估计。在近 90% 的分析样本中都检测到了帕马莱类的扩增子序列变体(ASV)。然而,在真核生物群落中,帕马氏菌的相对丰度平均不到0.2%,帕马氏菌ASVs的真实丰富度估计约为316个ASVs,这证实了帕马氏菌的低丰度和低多样性。系统发生分析将这些藻类分为四个支系,并将三种已知形态的硅化细胞分为三个不同的支系。Parmales藻类的丰度一般在两极地区较高,向热带地区逐渐降低,个别支系/亚支系的分布也有进一步的区别。总体而言,本研究结果表明各支系/亚支系对不同生态位的适应性各不相同。
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来源期刊
Microbes and Environments
Microbes and Environments 生物-生物工程与应用微生物
CiteScore
4.10
自引率
13.60%
发文量
66
审稿时长
3 months
期刊介绍: Microbial ecology in natural and engineered environments; Microbial degradation of xenobiotic compounds; Microbial processes in biogeochemical cycles; Microbial interactions and signaling with animals and plants; Interactions among microorganisms; Microorganisms related to public health; Phylogenetic and functional diversity of microbial communities; Genomics, metagenomics, and bioinformatics for microbiology; Application of microorganisms to agriculture, fishery, and industry; Molecular biology and biochemistry related to environmental microbiology; Methodology in general and environmental microbiology; Interdisciplinary research areas for microbial ecology (e.g., Astrobiology, and Origins of Life); Taxonomic description of novel microorganisms with ecological perspective; Physiology and metabolisms of microorganisms; Evolution of genes and microorganisms; Genome report of microorganisms with ecological perspective.
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