Computer-Assisted Discovery of Salvia fruticosa Compounds With Schistosomicidal Activity.

IF 2.3 Q3 BIOCHEMICAL RESEARCH METHODS Bioinformatics and Biology Insights Pub Date : 2024-03-27 eCollection Date: 2024-01-01 DOI:10.1177/11779322241240651
Ryman Shoko, Farirai Mandivenga
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Abstract

Schistosomiasis, otherwise known as bilharzia or snail fever, is a disease that usually affects poor people and people exposed to poor sanitation. The disease affects over 200 million people worldwide annually. Schistosomiasis has been treated using a single drug, praziquantel, since the 1970s and this is resulting in schistosomes becoming resistant. Therefore, there is an urgent need to develop new antischistosoma drugs and vaccines. This study focuses on identifying potential antischistosomal compounds from the plant Salvia fruticosa. We virtually screened a library of 163 S fruticosa compounds by docking against Schistosoma mansoni sulfotransferase (SmSULT) using the PyRx software. Docking scores ranged from -4.7 to -9.3 kcal/mol. Compounds with binding affinity of -7.6 or stronger were subjected to drug-likeness assessments using the DataWarrior software. We also employed the PAINS removal tool to filter off false-positive results. Twelve compounds passed the drug-likeness screen, and these were subjected to in silico toxicity predictions to determine their mutagenic, tumorigenic and reproductive potential. Seven compounds were predicted to be nontoxic. After considering the toxicity analysis results and drug scores of the compounds, we identified rosmarinic acid and hispidulin as qualifying for further evaluation as potential drugs against schistosomiasis. Free energy calculations using the fastDRH webserver and molecular dynamics simulations using CABS-flex showed that the receptor-ligand complexes for the 2 lead compounds are stable under physiological conditions. We recommend that rosmarinic acid and hispidulin be used as hit compounds for the development of potential antischistosomal drugs.

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计算机辅助发现具有杀血吸虫活性的丹参化合物
血吸虫病又称血吸虫病或蜗牛热,是一种通常影响穷人和卫生条件差的人的疾病。这种疾病每年影响全球 2 亿多人。自 20 世纪 70 年代以来,血吸虫病一直使用单一药物吡喹酮进行治疗,这导致血吸虫产生抗药性。因此,迫切需要开发新的抗血吸虫药物和疫苗。本研究的重点是从丹参中发现潜在的抗血吸虫化合物。我们利用 PyRx 软件,通过与曼氏血吸虫磺基转移酶(SmSULT)的对接,对 163 种丹参化合物库进行了虚拟筛选。对接得分介于 -4.7 至 -9.3 kcal/mol 之间。使用 DataWarrior 软件对结合亲和力为 -7.6 或更强的化合物进行药物相似性评估。我们还使用了 PAINS 去除工具来过滤假阳性结果。有 12 种化合物通过了药物相似性筛选,我们对这些化合物进行了硅毒性预测,以确定其诱变、致瘤和生殖潜力。有 7 个化合物被预测为无毒。在考虑了这些化合物的毒性分析结果和药物评分后,我们确定了迷迭香酸和糙米苷作为潜在的血吸虫病药物进行进一步评估。使用 fastDRH 网络服务器进行的自由能计算和使用 CABS-flex 进行的分子动力学模拟显示,这两种先导化合物的受体配体复合物在生理条件下是稳定的。我们建议将迷迭香酸和糙皮素作为开发潜在抗血吸虫药物的主打化合物。
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来源期刊
Bioinformatics and Biology Insights
Bioinformatics and Biology Insights BIOCHEMICAL RESEARCH METHODS-
CiteScore
6.80
自引率
1.70%
发文量
36
审稿时长
8 weeks
期刊介绍: Bioinformatics and Biology Insights is an open access, peer-reviewed journal that considers articles on bioinformatics methods and their applications which must pertain to biological insights. All papers should be easily amenable to biologists and as such help bridge the gap between theories and applications.
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