Application of the AlphaFold2 Protein Prediction Algorithm Based on Artificial Intelligence

Quan Zhang, Beichang Liu, Guoqing Cai, Jili Qian, Zhengyu Jin
{"title":"Application of the AlphaFold2 Protein Prediction Algorithm Based on Artificial Intelligence","authors":"Quan Zhang, Beichang Liu, Guoqing Cai, Jili Qian, Zhengyu Jin","doi":"10.53469/jtpes.2024.04(02).09","DOIUrl":null,"url":null,"abstract":"As the expression products of genes and macromolecules in living organisms, proteins are the main material basis of life activities. They exist widely in various cells and have various functions such as catalysis, cell signaling and structural support, playing a key role in life activities and functional execution. At the same time, the study of protein can better grasp the life activities from the molecular level, and has important practical significance for disease management, new drug development and crop improvement. Due to advances in high-throughput sequencing technology, protein sequence data has grown exponentially. The protein function prediction problem can be seen as a multi-label binary classification problem by extracting the features of a given protein and mapping them to the protein function label space. A variety of data sources can be mined to obtain protein function prediction features, such as protein sequence, protein structure, protein family, protein interaction network, etc. The initial steps are classical sequence-based methods, such as BLAST, which calculate the similarity between protein sequences and transmit annotations between proteins whose similarity scores exceed a specific threshold. This method has great limitations for protein function prediction without sequence similarity. Therefore, this paper analyzes the development prospect of bioanalysis and artificial intelligence through the application status and realization path of AlphaFold2 protein prediction algorithm based on artificial intelligence.","PeriodicalId":489516,"journal":{"name":"Journal of Theory and Practice of Engineering Science","volume":"133 45","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"6","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Theory and Practice of Engineering Science","FirstCategoryId":"0","ListUrlMain":"https://doi.org/10.53469/jtpes.2024.04(02).09","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 6

Abstract

As the expression products of genes and macromolecules in living organisms, proteins are the main material basis of life activities. They exist widely in various cells and have various functions such as catalysis, cell signaling and structural support, playing a key role in life activities and functional execution. At the same time, the study of protein can better grasp the life activities from the molecular level, and has important practical significance for disease management, new drug development and crop improvement. Due to advances in high-throughput sequencing technology, protein sequence data has grown exponentially. The protein function prediction problem can be seen as a multi-label binary classification problem by extracting the features of a given protein and mapping them to the protein function label space. A variety of data sources can be mined to obtain protein function prediction features, such as protein sequence, protein structure, protein family, protein interaction network, etc. The initial steps are classical sequence-based methods, such as BLAST, which calculate the similarity between protein sequences and transmit annotations between proteins whose similarity scores exceed a specific threshold. This method has great limitations for protein function prediction without sequence similarity. Therefore, this paper analyzes the development prospect of bioanalysis and artificial intelligence through the application status and realization path of AlphaFold2 protein prediction algorithm based on artificial intelligence.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
基于人工智能的 AlphaFold2 蛋白预测算法的应用
蛋白质作为生物体内基因和大分子的表达产物,是生命活动的主要物质基础。它们广泛存在于各种细胞中,具有催化、细胞信号转导和结构支持等多种功能,在生命活动和功能执行中起着关键作用。同时,对蛋白质的研究能更好地从分子水平把握生命活动,对疾病管理、新药研发和作物改良具有重要的现实意义。随着高通量测序技术的发展,蛋白质序列数据呈指数级增长。通过提取给定蛋白质的特征并将其映射到蛋白质功能标签空间,蛋白质功能预测问题可视为一个多标签二元分类问题。要获得蛋白质功能预测特征,可以挖掘多种数据源,如蛋白质序列、蛋白质结构、蛋白质家族、蛋白质相互作用网络等。最初的步骤是基于序列的经典方法,如 BLAST,该方法计算蛋白质序列之间的相似性,并在相似性得分超过特定阈值的蛋白质之间传递注释。这种方法对于没有序列相似性的蛋白质功能预测有很大的局限性。因此,本文通过基于人工智能的 AlphaFold2 蛋白质预测算法的应用现状和实现路径,分析了生物分析和人工智能的发展前景。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
A Review on Mechanical Automation Control System Enhanced Heart Attack Prediction Using eXtreme Gradient Boosting Feasibility Study of UHPC Reinforced Masonry Structure Review of Research on Nuclear Signal Pulse Shaping Analysis on Machining Precision Control of Mechanical Die
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1