Yu-Sheng Chang , Michael Fuchs , Hexuan Liu , Michael Wallner , Guan-Ru Yu
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引用次数: 0
Abstract
Tree-child networks are one of the most prominent network classes for modeling evolutionary processes which contain reticulation events. Several recent studies have addressed counting questions for bicombining tree-child networks in which every reticulation node has exactly two parents. We extend these studies to d-combining tree-child networks where every reticulation node has now parents, and we study one-component as well as general tree-child networks. For the number of one-component networks, we derive an exact formula from which asymptotic results follow that contain a stretched exponential for , yet not for . For general networks, we find a novel encoding by words which leads to a recurrence for their numbers. From this recurrence, we derive asymptotic results which show the appearance of a stretched exponential for all . Moreover, we also give results on the distribution of shape parameters (e.g., number of reticulation nodes, Sackin index) of a network which is drawn uniformly at random from the set of all tree-child networks with the same number of leaves. We show phase transitions depending on d, leading to normal, Bessel, Poisson, and degenerate distributions. Some of our results are new even in the bicombining case.
期刊介绍:
Interdisciplinary in its coverage, Advances in Applied Mathematics is dedicated to the publication of original and survey articles on rigorous methods and results in applied mathematics. The journal features articles on discrete mathematics, discrete probability theory, theoretical statistics, mathematical biology and bioinformatics, applied commutative algebra and algebraic geometry, convexity theory, experimental mathematics, theoretical computer science, and other areas.
Emphasizing papers that represent a substantial mathematical advance in their field, the journal is an excellent source of current information for mathematicians, computer scientists, applied mathematicians, physicists, statisticians, and biologists. Over the past ten years, Advances in Applied Mathematics has published research papers written by many of the foremost mathematicians of our time.