Bounds on the Ultrasensitivity of Biochemical Reaction Cascades

IF 2.2 4区 数学 Q2 BIOLOGY Bulletin of Mathematical Biology Pub Date : 2024-04-18 DOI:10.1007/s11538-024-01287-z
Marcello Pajoh-Casco, Abishek Vinujudson, German Enciso
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Abstract

The ultrasensitivity of a dose response function can be quantifiably defined using the generalized Hill coefficient of the function. We examined an upper bound for the Hill coefficient of the composition of two functions, namely the product of their individual Hill coefficients. We proved that this upper bound holds for compositions of Hill functions, and that there are instances of counterexamples that exist for more general sigmoidal functions. Additionally, we tested computationally other types of sigmoidal functions, such as the logistic and inverse trigonometric functions, and we provided computational evidence that in these cases the inequality also holds. We show that in large generality there is a limit to how ultrasensitive the composition of two functions can be, which has applications to understanding signaling cascades in biochemical reactions.

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生化反应级联超灵敏度的界限
剂量反应函数的超灵敏度可以用该函数的广义希尔系数来量化定义。我们研究了两个函数组成的希尔系数的上限,即它们各自希尔系数的乘积。我们证明了这一上限对于希尔函数的组合是成立的,而且对于更一般的西格玛函数也存在反例。此外,我们还通过计算测试了其他类型的西格玛函数,如对数函数和反三角函数,并提供了在这些情况下不等式同样成立的计算证据。我们证明,在很大程度上,两个函数组成的超灵敏度是有限制的,这在理解生化反应中的信号级联方面具有应用价值。
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来源期刊
CiteScore
3.90
自引率
8.60%
发文量
123
审稿时长
7.5 months
期刊介绍: The Bulletin of Mathematical Biology, the official journal of the Society for Mathematical Biology, disseminates original research findings and other information relevant to the interface of biology and the mathematical sciences. Contributions should have relevance to both fields. In order to accommodate the broad scope of new developments, the journal accepts a variety of contributions, including: Original research articles focused on new biological insights gained with the help of tools from the mathematical sciences or new mathematical tools and methods with demonstrated applicability to biological investigations Research in mathematical biology education Reviews Commentaries Perspectives, and contributions that discuss issues important to the profession All contributions are peer-reviewed.
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