Bacterial discrimination by Fourier transform infrared spectroscopy, MALDI-mass spectrometry and whole-genome sequencing.

IF 4.7 Q2 MATERIALS SCIENCE, BIOMATERIALS ACS Applied Bio Materials Pub Date : 2024-04-23 DOI:10.2217/fmb-2024-0043
Rachel McGalliard, H. Muhamadali, N. AlMasoud, S. Haldenby, Valeria Romero-Soriano, Ellie Allman, Yun Xu, Adam P Roberts, Steve Paterson, E. Carrol, R. Goodacre
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Abstract

Aim: Proof-of-concept study, highlighting the clinical diagnostic ability of FT-IR compared with MALDI-TOF MS, combined with WGS. Materials & methods: 104 pathogenic isolates of Neisseria meningitidis, Streptococcus pneumoniae, Streptococcus pyogenes and Staphylococcus aureus were analyzed. Results: Overall prediction accuracy was 99.6% in FT-IR and 95.8% in MALDI-TOF-MS. Analysis of N. meningitidis serogroups was superior in FT-IR compared with MALDI-TOF-MS. Phylogenetic relationship of S. pyogenes was similar by FT-IR and WGS, but not S. aureus or S. pneumoniae. Clinical severity was associated with the zinc ABC transporter and DNA repair genes in S. pneumoniae and cell wall proteins (biofilm formation, antibiotic and complement permeability) in S. aureus via WGS. Conclusion: FT-IR warrants further clinical evaluation as a promising diagnostic tool.
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通过傅立叶变换红外光谱法、MALDI 质谱法和全基因组测序对细菌进行鉴别。
目的:概念验证研究,强调傅立叶变换红外光谱与 MALDI-TOF MS 相比,结合 WGS 的临床诊断能力。材料与方法:分析了 104 株脑膜炎奈瑟菌、肺炎链球菌、化脓性链球菌和金黄色葡萄球菌的致病性分离物。结果显示傅立叶变换红外光谱的总体预测准确率为 99.6%,MALDI-TOF-MS 为 95.8%。与 MALDI-TOF-MS 相比,傅立叶变换红外光谱对脑膜炎双球菌血清群的分析更为准确。通过傅立叶变换红外光谱和 WGS 分析,化脓性链球菌的系统发育关系相似,但金黄色葡萄球菌和肺炎双球菌的系统发育关系不相似。肺炎双球菌的临床严重程度与锌ABC转运体和DNA修复基因有关,而金黄色葡萄球菌的细胞壁蛋白(生物膜形成、抗生素和补体渗透性)则与WGS有关。结论傅立叶变换红外光谱作为一种有前途的诊断工具,值得临床进一步评估。
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来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
期刊介绍: ACS Applied Bio Materials is an interdisciplinary journal publishing original research covering all aspects of biomaterials and biointerfaces including and beyond the traditional biosensing, biomedical and therapeutic applications. The journal is devoted to reports of new and original experimental and theoretical research of an applied nature that integrates knowledge in the areas of materials, engineering, physics, bioscience, and chemistry into important bio applications. The journal is specifically interested in work that addresses the relationship between structure and function and assesses the stability and degradation of materials under relevant environmental and biological conditions.
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