{"title":"“PEOPLE” MEET “MARKOVIANS” — INDIVIDUAL-BASED MODELING WITH HYBRID STOCHASTIC SYSTEMS","authors":"Molly Hawker, Ivo Siekmann","doi":"10.1142/s0218339023400028","DOIUrl":null,"url":null,"abstract":"Individual-based models (IBMs) enable modelers to avoid far-reaching abstractions and strong simplifications by allowing for a state-based representation of individuals. The fact that IBMs are not represented using a standardized mathematical framework such as differential equations makes it harder to reproduce IBMs and introduces difficulties in the analysis of IBMs. We propose a model architecture based on representing individuals via Markov models. Individuals are coupled to populations — for which individuals are not explicitly represented — that are modeled by differential equations. The resulting models consisting of continuous-time finite-state Markov models coupled to systems of differential equations are examples of piecewise-deterministic Markov processes (PDMPs). We will demonstrate that PDMPs, also known as hybrid stochastic systems, allow us to design detailed state-based representations of individuals which, at the same time, can be systematically analyzed by taking advantage of the theory of PDMPs. We will illustrate design and analysis of IBMs using PDMPs via the example of a predator that intermittently feeds on a logistically growing prey by stochastically switching between a resting and a feeding state. This simple model shows a surprisingly rich dynamics which, nevertheless, can be comprehensively analyzed using the theory of PDMPs.","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":" 13","pages":""},"PeriodicalIF":17.7000,"publicationDate":"2024-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1142/s0218339023400028","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 1
Abstract
Individual-based models (IBMs) enable modelers to avoid far-reaching abstractions and strong simplifications by allowing for a state-based representation of individuals. The fact that IBMs are not represented using a standardized mathematical framework such as differential equations makes it harder to reproduce IBMs and introduces difficulties in the analysis of IBMs. We propose a model architecture based on representing individuals via Markov models. Individuals are coupled to populations — for which individuals are not explicitly represented — that are modeled by differential equations. The resulting models consisting of continuous-time finite-state Markov models coupled to systems of differential equations are examples of piecewise-deterministic Markov processes (PDMPs). We will demonstrate that PDMPs, also known as hybrid stochastic systems, allow us to design detailed state-based representations of individuals which, at the same time, can be systematically analyzed by taking advantage of the theory of PDMPs. We will illustrate design and analysis of IBMs using PDMPs via the example of a predator that intermittently feeds on a logistically growing prey by stochastically switching between a resting and a feeding state. This simple model shows a surprisingly rich dynamics which, nevertheless, can be comprehensively analyzed using the theory of PDMPs.
期刊介绍:
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.