“PEOPLE” MEET “MARKOVIANS” — INDIVIDUAL-BASED MODELING WITH HYBRID STOCHASTIC SYSTEMS

IF 1.3 4区 数学 Q3 BIOLOGY Journal of Biological Systems Pub Date : 2024-04-18 DOI:10.1142/s0218339023400028
Molly Hawker, Ivo Siekmann
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引用次数: 1

Abstract

Individual-based models (IBMs) enable modelers to avoid far-reaching abstractions and strong simplifications by allowing for a state-based representation of individuals. The fact that IBMs are not represented using a standardized mathematical framework such as differential equations makes it harder to reproduce IBMs and introduces difficulties in the analysis of IBMs. We propose a model architecture based on representing individuals via Markov models. Individuals are coupled to populations — for which individuals are not explicitly represented — that are modeled by differential equations. The resulting models consisting of continuous-time finite-state Markov models coupled to systems of differential equations are examples of piecewise-deterministic Markov processes (PDMPs). We will demonstrate that PDMPs, also known as hybrid stochastic systems, allow us to design detailed state-based representations of individuals which, at the same time, can be systematically analyzed by taking advantage of the theory of PDMPs. We will illustrate design and analysis of IBMs using PDMPs via the example of a predator that intermittently feeds on a logistically growing prey by stochastically switching between a resting and a feeding state. This simple model shows a surprisingly rich dynamics which, nevertheless, can be comprehensively analyzed using the theory of PDMPs.
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"人 "与 "马尔可夫人"--基于个体的混合随机系统建模
基于个体的模型(IBMs)通过对个体进行基于状态的表示,使建模者能够避免意义深远的抽象和强烈的简化。基于个体的模型(IBMs)不使用微分方程等标准化数学框架来表示,这增加了 IBMs 的重现难度,也给 IBMs 的分析带来了困难。我们提出了一种基于马尔可夫模型表示个体的模型架构。个体与种群耦合--种群中的个体没有明确表示--种群由微分方程建模。由连续时间有限状态马尔可夫模型与微分方程系统耦合而成的模型是片断确定性马尔可夫过程(PDMP)的实例。我们将证明,PDMPs(也称为混合随机系统)允许我们设计详细的基于状态的个体表示,同时可以利用 PDMPs 理论对其进行系统分析。我们将以捕食者为例,说明如何利用 PDMPs 设计和分析 IBM,捕食者通过在休息状态和进食状态之间随机切换,间歇性地捕食逻辑上不断增长的猎物。这个简单的模型显示出令人惊讶的丰富动态,然而,我们可以利用 PDMPs 理论对其进行全面分析。
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来源期刊
CiteScore
2.80
自引率
12.50%
发文量
31
审稿时长
1 months
期刊介绍: The Journal of Biological Systems is published quarterly. The goal of the Journal is to promote interdisciplinary approaches in Biology and in Medicine, and the study of biological situations with a variety of tools, including mathematical and general systems methods. The Journal solicits original research papers and survey articles in areas that include (but are not limited to): Complex systems studies; isomorphies; nonlinear dynamics; entropy; mathematical tools and systems theories with applications in Biology and Medicine. Interdisciplinary approaches in Biology and Medicine; transfer of methods from one discipline to another; integration of biological levels, from atomic to molecular, macromolecular, cellular, and organic levels; animal biology; plant biology. Environmental studies; relationships between individuals, populations, communities and ecosystems; bioeconomics, management of renewable resources; hierarchy theory; integration of spatial and time scales. Evolutionary biology; co-evolutions; genetics and evolution; branching processes and phyllotaxis. Medical systems; physiology; cardiac modeling; computer models in Medicine; cancer research; epidemiology. Numerical simulations and computations; numerical study and analysis of biological data. Epistemology; history of science. The journal will also publish book reviews.
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