{"title":"“PEOPLE” MEET “MARKOVIANS” — INDIVIDUAL-BASED MODELING WITH HYBRID STOCHASTIC SYSTEMS","authors":"Molly Hawker, Ivo Siekmann","doi":"10.1142/s0218339023400028","DOIUrl":null,"url":null,"abstract":"Individual-based models (IBMs) enable modelers to avoid far-reaching abstractions and strong simplifications by allowing for a state-based representation of individuals. The fact that IBMs are not represented using a standardized mathematical framework such as differential equations makes it harder to reproduce IBMs and introduces difficulties in the analysis of IBMs. We propose a model architecture based on representing individuals via Markov models. Individuals are coupled to populations — for which individuals are not explicitly represented — that are modeled by differential equations. The resulting models consisting of continuous-time finite-state Markov models coupled to systems of differential equations are examples of piecewise-deterministic Markov processes (PDMPs). We will demonstrate that PDMPs, also known as hybrid stochastic systems, allow us to design detailed state-based representations of individuals which, at the same time, can be systematically analyzed by taking advantage of the theory of PDMPs. We will illustrate design and analysis of IBMs using PDMPs via the example of a predator that intermittently feeds on a logistically growing prey by stochastically switching between a resting and a feeding state. This simple model shows a surprisingly rich dynamics which, nevertheless, can be comprehensively analyzed using the theory of PDMPs.","PeriodicalId":54872,"journal":{"name":"Journal of Biological Systems","volume":null,"pages":null},"PeriodicalIF":1.3000,"publicationDate":"2024-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biological Systems","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1142/s0218339023400028","RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 1
Abstract
Individual-based models (IBMs) enable modelers to avoid far-reaching abstractions and strong simplifications by allowing for a state-based representation of individuals. The fact that IBMs are not represented using a standardized mathematical framework such as differential equations makes it harder to reproduce IBMs and introduces difficulties in the analysis of IBMs. We propose a model architecture based on representing individuals via Markov models. Individuals are coupled to populations — for which individuals are not explicitly represented — that are modeled by differential equations. The resulting models consisting of continuous-time finite-state Markov models coupled to systems of differential equations are examples of piecewise-deterministic Markov processes (PDMPs). We will demonstrate that PDMPs, also known as hybrid stochastic systems, allow us to design detailed state-based representations of individuals which, at the same time, can be systematically analyzed by taking advantage of the theory of PDMPs. We will illustrate design and analysis of IBMs using PDMPs via the example of a predator that intermittently feeds on a logistically growing prey by stochastically switching between a resting and a feeding state. This simple model shows a surprisingly rich dynamics which, nevertheless, can be comprehensively analyzed using the theory of PDMPs.
期刊介绍:
The Journal of Biological Systems is published quarterly. The goal of the Journal is to promote interdisciplinary approaches in Biology and in Medicine, and the study of biological situations with a variety of tools, including mathematical and general systems methods. The Journal solicits original research papers and survey articles in areas that include (but are not limited to):
Complex systems studies; isomorphies; nonlinear dynamics; entropy; mathematical tools and systems theories with applications in Biology and Medicine.
Interdisciplinary approaches in Biology and Medicine; transfer of methods from one discipline to another; integration of biological levels, from atomic to molecular, macromolecular, cellular, and organic levels; animal biology; plant biology.
Environmental studies; relationships between individuals, populations, communities and ecosystems; bioeconomics, management of renewable resources; hierarchy theory; integration of spatial and time scales.
Evolutionary biology; co-evolutions; genetics and evolution; branching processes and phyllotaxis.
Medical systems; physiology; cardiac modeling; computer models in Medicine; cancer research; epidemiology.
Numerical simulations and computations; numerical study and analysis of biological data.
Epistemology; history of science.
The journal will also publish book reviews.