DuMato: An efficient warp-centric subgraph enumeration system for GPU

IF 3.4 3区 计算机科学 Q1 COMPUTER SCIENCE, THEORY & METHODS Journal of Parallel and Distributed Computing Pub Date : 2024-04-22 DOI:10.1016/j.jpdc.2024.104903
Samuel Ferraz , Vinicius Dias , Carlos H.C. Teixeira , Srinivasan Parthasarathy , George Teodoro , Wagner Meira Jr.
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Abstract

Subgraph enumeration is a heavy-computing procedure that lies at the core of Graph Pattern Mining (GPM) algorithms, whose goal is to extract subgraphs from larger graphs according to a given property. Scaling GPM algorithms for GPUs is challenging due to irregularity, high memory demand, and non-trivial choice of enumeration paradigms. In this work we propose a depth-first-search subgraph exploration strategy (DFS-wide) to improve the memory locality and access patterns across different enumeration paradigms. We design a warp-centric workflow to the problem that reduces divergences and ensures that accesses to graph data are coalesced. A weight-based dynamic workload redistribution is also proposed to mitigate load imbalance. We put together these strategies in a system called DuMato, allowing efficient implementations of several GPM algorithms via a common set of GPU primitives. Our experiments show that DuMato's optimizations are effective and that it enables exploring larger subgraphs when compared to state-of-the-art systems.

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DuMato:面向 GPU 的高效经中心子图枚举系统
子图枚举是图形模式挖掘(GPM)算法的核心,其目标是从更大的图形中根据给定属性提取子图。由于不规则性、高内存需求和枚举范式的非三维选择,为 GPU 扩展 GPM 算法具有挑战性。在这项工作中,我们提出了一种深度优先搜索子图探索策略(DFS-wide),以改善不同枚举范式的内存局部性和访问模式。我们设计了一个以翘曲为中心的工作流程,以减少分歧并确保对图数据的访问是聚合的。此外,我们还提出了一种基于权重的动态工作量再分配方法,以缓解负载不平衡问题。我们将这些策略整合到一个名为 DuMato 的系统中,允许通过一套通用的 GPU 基元高效地实现几种 GPM 算法。我们的实验表明,DuMato 的优化非常有效,与最先进的系统相比,它可以探索更大的子图。
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来源期刊
Journal of Parallel and Distributed Computing
Journal of Parallel and Distributed Computing 工程技术-计算机:理论方法
CiteScore
10.30
自引率
2.60%
发文量
172
审稿时长
12 months
期刊介绍: This international journal is directed to researchers, engineers, educators, managers, programmers, and users of computers who have particular interests in parallel processing and/or distributed computing. The Journal of Parallel and Distributed Computing publishes original research papers and timely review articles on the theory, design, evaluation, and use of parallel and/or distributed computing systems. The journal also features special issues on these topics; again covering the full range from the design to the use of our targeted systems.
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