High-performance computing in healthcare:an automatic literature analysis perspective

IF 8.6 2区 计算机科学 Q1 COMPUTER SCIENCE, THEORY & METHODS Journal of Big Data Pub Date : 2024-05-02 DOI:10.1186/s40537-024-00929-2
Jieyi Li, Shuai Wang, Stevan Rudinac, Anwar Osseyran
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Abstract

The adoption of high-performance computing (HPC) in healthcare has gained significant attention in recent years, driving advancements in medical research and clinical practice. Exploring the literature on HPC implementation in healthcare is valuable for decision-makers as it provides insights into potential areas for further investigation and investment. However, manually analyzing the vast number of scholarly articles is a challenging and time-consuming task. Fortunately, topic modeling techniques offer the capacity to process extensive volumes of scientific literature, identifying key trends within the field. This paper presents an automatic literature analysis framework based on a state-of-art vector-based topic modeling algorithm with multiple embedding techniques, unveiling the research trends surrounding HPC utilization in healthcare. The proposed pipeline consists of four phases: paper extraction, data preprocessing, topic modeling and outlier detection, followed by visualization. It enables the automatic extraction of meaningful topics, exploration of their interrelationships, and identification of emerging research directions in an intuitive manner. The findings highlight the transition of HPC adoption in healthcare from traditional numerical simulation and surgical visualization to emerging topics such as drug discovery, AI-driven medical image analysis, and genomic analysis, as well as correlations and interdisciplinary connections among application domains.

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医疗保健领域的高性能计算:自动文献分析视角
近年来,高性能计算(HPC)在医疗保健领域的应用备受关注,推动了医学研究和临床实践的进步。探索有关医疗保健领域高性能计算实施情况的文献对决策者来说非常有价值,因为它为进一步调查和投资的潜在领域提供了洞察力。然而,对大量学术文章进行人工分析是一项具有挑战性且耗时的任务。幸运的是,主题建模技术能够处理大量科学文献,识别该领域的关键趋势。本文介绍了一种自动文献分析框架,该框架基于最先进的矢量主题建模算法和多种嵌入技术,揭示了医疗保健领域利用高性能计算技术的研究趋势。所提出的管道包括四个阶段:论文提取、数据预处理、主题建模和离群点检测,然后是可视化。它能以直观的方式自动提取有意义的主题,探索它们之间的相互关系,并确定新兴的研究方向。研究结果凸显了医疗保健领域采用高性能计算技术的过渡情况,即从传统的数值模拟和手术可视化过渡到药物发现、人工智能驱动的医学图像分析和基因组分析等新兴主题,以及各应用领域之间的相关性和跨学科联系。
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来源期刊
Journal of Big Data
Journal of Big Data Computer Science-Information Systems
CiteScore
17.80
自引率
3.70%
发文量
105
审稿时长
13 weeks
期刊介绍: The Journal of Big Data publishes high-quality, scholarly research papers, methodologies, and case studies covering a broad spectrum of topics, from big data analytics to data-intensive computing and all applications of big data research. It addresses challenges facing big data today and in the future, including data capture and storage, search, sharing, analytics, technologies, visualization, architectures, data mining, machine learning, cloud computing, distributed systems, and scalable storage. The journal serves as a seminal source of innovative material for academic researchers and practitioners alike.
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