Structural and biochemical characterization of the M405S variant of Desulfovibrio vulgaris formate dehydrogenase.

IF 1.1 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS Acta crystallographica. Section F, Structural biology communications Pub Date : 2024-05-01 DOI:10.1107/S2053230X24003911
Guilherme Vilela-Alves, Rita Rebelo Manuel, Neide Pedrosa, Inês A Cardoso Pereira, Maria João Romão, Cristiano Mota
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Abstract

Molybdenum- or tungsten-dependent formate dehydrogenases have emerged as significant catalysts for the chemical reduction of CO2 to formate, with biotechnological applications envisaged in climate-change mitigation. The role of Met405 in the active site of Desulfovibrio vulgaris formate dehydrogenase AB (DvFdhAB) has remained elusive. However, its proximity to the metal site and the conformational change that it undergoes between the resting and active forms suggests a functional role. In this work, the M405S variant was engineered, which allowed the active-site geometry in the absence of methionine Sδ interactions with the metal site to be revealed and the role of Met405 in catalysis to be probed. This variant displayed reduced activity in both formate oxidation and CO2 reduction, together with an increased sensitivity to oxygen inactivation.

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低俗脱硫弧菌甲酸脱氢酶 M405S 变体的结构和生物化学特征。
依赖钼或钨的甲酸脱氢酶已成为将二氧化碳化学还原为甲酸盐的重要催化剂,其生物技术应用有望缓解气候变化。Met405 在脱硫弧菌甲酸脱氢酶 AB(DvFdhAB)活性位点中的作用一直难以确定。不过,它与金属位点的接近程度以及在静态和活性形式之间发生的构象变化表明了它的功能性作用。在这项工作中,我们设计了 M405S 变体,从而揭示了在没有蛋氨酸 Sδ 与金属位点相互作用的情况下活性位点的几何形状,并探究了 Met405 在催化过程中的作用。这种变体在甲酸氧化和二氧化碳还原中的活性都有所降低,对氧气失活的敏感性也有所提高。
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来源期刊
Acta crystallographica. Section F, Structural biology communications
Acta crystallographica. Section F, Structural biology communications BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
1.90
自引率
0.00%
发文量
95
期刊介绍: Acta Crystallographica Section F is a rapid structural biology communications journal. Articles on any aspect of structural biology, including structures determined using high-throughput methods or from iterative studies such as those used in the pharmaceutical industry, are welcomed by the journal. The journal offers the option of open access, and all communications benefit from unlimited free use of colour illustrations and no page charges. Authors are encouraged to submit multimedia content for publication with their articles. Acta Cryst. F has a dedicated online tool called publBio that is designed to make the preparation and submission of articles easier for authors.
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