A consortium of Hordeum vulgare and gut microbiota against non-alcoholic fatty liver disease via data-driven analysis.

IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Artificial Cells, Nanomedicine, and Biotechnology Pub Date : 2024-12-01 Epub Date: 2024-04-30 DOI:10.1080/21691401.2024.2347380
Su-Been Lee, Haripriya Gupta, Byeong-Hyun Min, Raja Ganesan, Satya Priya Sharma, Sung-Min Won, Jin-Ju Jeong, Min-Gi Cha, Goo-Hyun Kwon, Min-Kyo Jeong, Ji-Ye Hyun, Jung-A Eom, Hee-Jin Park, Sang-Jun Yoon, Sang Youn Lee, Mi-Ran Choi, Dong Joon Kim, Ki-Kwang Oh, Ki-Tae Suk
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Abstract

Despite many recent studies on non-alcoholic fatty liver disease (NAFLD) therapeutics, the optimal treatment has yet to be determined. In this unfinished project, we combined secondary metabolites (SMs) from the gut microbiota (GM) and Hordeum vulgare (HV) to investigate their combinatorial effects via network pharmacology (NP). Additionally, we analyzed GM or barley - signalling pathways - targets - metabolites (GBSTMs) in combinatorial perspectives (HV, and GM). A total of 31 key targets were analysed via a protein-protein interaction (PPI) network, and JUN was identified as the uppermost target in NAFLD. On a bubble plot, we revealed that apelin signalling pathway, which had the lowest enrichment factor antagonize NAFLD. Holistically, we scrutinized GBSTM to identify key components (GM, signalling pathways, targets, and metabolites) associated with the Apelin signalling pathway. Consequently, we found that the primary GMs (Eubacterium limosum, Eggerthella sp. SDG-2, Alistipes indistinctus YIT 12060, Odoribacter laneus YIT 12061, Paraprevotella clara YIT 11840, Paraprevotella xylaniphila YIT 11841) to ameliorate NAFLD. The molecular docking test (MDT) suggested that tryptanthrin-JUN is an agonist, conversely, dihydroglycitein-HDAC5, 1,3-diphenylpropan-2-ol-NOS1, and (10[(Acetyloxy)methyl]-9-anthryl)methyl acetate-NOS2, which are antagonistic conformers in the apelin signalling pathway. Overall, these results suggest that combination therapy could be an effective strategy for treating NAFLD.

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通过数据驱动的分析,研究冬虫夏草和肠道微生物群联合防治非酒精性脂肪肝。
尽管最近有许多关于非酒精性脂肪肝(NAFLD)疗法的研究,但最佳治疗方法尚未确定。在这个未完成的项目中,我们结合了来自肠道微生物群(GM)和大麦(HV)的次生代谢物(SMs),通过网络药理学(NP)研究它们的组合效应。此外,我们还从组合角度(HV 和 GM)分析了 GM 或大麦-信号通路-靶标-代谢物(GBSTMs)。我们通过蛋白质-蛋白质相互作用(PPI)网络分析了31个关键靶点,发现JUN是非酒精性脂肪肝的首要靶点。在气泡图上,我们发现凋亡蛋白信号通路的富集因子最低,但却能拮抗非酒精性脂肪肝。从整体上看,我们仔细研究了 GBSTM,以确定与 Apelin 信号通路相关的关键成分(基因组、信号通路、靶标和代谢物)。结果,我们发现主要的基因改造菌(Eubacterium limosum、Eggerthella sp.SDG-2、Alistipes indistinctus YIT 12060、Odoribacter laneus YIT 12061、Paraprevotella clara YIT 11840、Paraprevotella xylaniphila YIT 11841)可改善非酒精性脂肪肝。分子对接试验(MDT)表明,tryptanthrin-JUN 是一种激动剂,相反,二氢甘氨酰-HDAC5、1,3-二苯基丙烷-2-醇-NOS1 和(10[(乙酰氧基)甲基]-9-蒽基)甲基乙酸酯-NOS2 是 apelin 信号通路中的拮抗构象。总之,这些结果表明,联合疗法可能是治疗非酒精性脂肪肝的有效策略。
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来源期刊
Artificial Cells, Nanomedicine, and Biotechnology
Artificial Cells, Nanomedicine, and Biotechnology BIOTECHNOLOGY & APPLIED MICROBIOLOGY-ENGINEERING, BIOMEDICAL
CiteScore
10.90
自引率
0.00%
发文量
48
审稿时长
20 weeks
期刊介绍: Artificial Cells, Nanomedicine and Biotechnology covers the frontiers of interdisciplinary research and application, combining artificial cells, nanotechnology, nanobiotechnology, biotechnology, molecular biology, bioencapsulation, novel carriers, stem cells and tissue engineering. Emphasis is on basic research, applied research, and clinical and industrial applications of the following topics:artificial cellsblood substitutes and oxygen therapeuticsnanotechnology, nanobiotecnology, nanomedicinetissue engineeringstem cellsbioencapsulationmicroencapsulation and nanoencapsulationmicroparticles and nanoparticlesliposomescell therapy and gene therapyenzyme therapydrug delivery systemsbiodegradable and biocompatible polymers for scaffolds and carriersbiosensorsimmobilized enzymes and their usesother biotechnological and nanobiotechnological approachesRapid progress in modern research cannot be carried out in isolation and is based on the combined use of the different novel approaches. The interdisciplinary research involving novel approaches, as discussed above, has revolutionized this field resulting in rapid developments. This journal serves to bring these different, modern and futuristic approaches together for the academic, clinical and industrial communities to allow for even greater developments of this highly interdisciplinary area.
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