Role of phosphate-coordinating arginine residues in the thermal stability of uridine phosphorylase from Shewanella oneidensis MR-1

IF 3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Biochimie Pub Date : 2024-05-07 DOI:10.1016/j.biochi.2024.05.008
Alexey Antipov, Natalya Okorokova, Nadezhda Mordkovich, Tatyana Safonova, Vladimir Veiko
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Abstract

The role of phosphate-coordinating arginine residues in the thermal stability of uridine phosphorylase from Shewanella oneidensis MR-1 was investigated by mutation analysis. Uridine phosphorylase mutant genes were constructed by site-directed mutagenesis. The enzyme mutants were prepared and isolated, and their kinetic parameters were determined. It was shown that all these arginine residues play an important role both in the catalysis and thermal stability. The arginine residues 176 were demonstrated to form a kind of a phosphate pore in the hexameric structure of uridine phosphorylase, and they not only contribute to thermal stabilization of the enzyme but also have a regulatory function. The replacement of arginine 176 with an alanine residue resulted in a significant decrease in the kinetic stability of the enzyme but led to a twofold increase in its specific activity.

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磷酸盐配位精氨酸残基在 Shewanella oneidensis MR-1 胞尿苷磷酸酶热稳定性中的作用。
通过突变分析,研究了磷酸配位精氨酸残基在Shewanella oneidensis MR-1尿苷磷酸化酶热稳定性中的作用。通过定点诱变构建了尿苷磷酸化酶突变基因。制备并分离了酶突变体,测定了它们的动力学参数。结果表明,所有这些精氨酸残基在催化和热稳定性方面都起着重要作用。研究证明,精氨酸残基 176 在尿苷磷酸化酶的六聚体结构中形成了一种磷酸孔,它们不仅有助于酶的热稳定,还具有调节功能。用丙氨酸残基取代精氨酸 176 会显著降低酶的动力学稳定性,但会使其比活性提高两倍。
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来源期刊
Biochimie
Biochimie 生物-生化与分子生物学
CiteScore
7.20
自引率
2.60%
发文量
219
审稿时长
40 days
期刊介绍: Biochimie publishes original research articles, short communications, review articles, graphical reviews, mini-reviews, and hypotheses in the broad areas of biology, including biochemistry, enzymology, molecular and cell biology, metabolic regulation, genetics, immunology, microbiology, structural biology, genomics, proteomics, and molecular mechanisms of disease. Biochimie publishes exclusively in English. Articles are subject to peer review, and must satisfy the requirements of originality, high scientific integrity and general interest to a broad range of readers. Submissions that are judged to be of sound scientific and technical quality but do not fully satisfy the requirements for publication in Biochimie may benefit from a transfer service to a more suitable journal within the same subject area.
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