CIME4R: Exploring iterative, AI-guided chemical reaction optimization campaigns in their parameter space

IF 7.1 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Journal of Cheminformatics Pub Date : 2024-05-10 DOI:10.1186/s13321-024-00840-1
Christina Humer, Rachel Nicholls, Henry Heberle, Moritz Heckmann, Michael Pühringer, Thomas Wolf, Maximilian Lübbesmeyer, Julian Heinrich, Julius Hillenbrand, Giulio Volpin, Marc Streit
{"title":"CIME4R: Exploring iterative, AI-guided chemical reaction optimization campaigns in their parameter space","authors":"Christina Humer,&nbsp;Rachel Nicholls,&nbsp;Henry Heberle,&nbsp;Moritz Heckmann,&nbsp;Michael Pühringer,&nbsp;Thomas Wolf,&nbsp;Maximilian Lübbesmeyer,&nbsp;Julian Heinrich,&nbsp;Julius Hillenbrand,&nbsp;Giulio Volpin,&nbsp;Marc Streit","doi":"10.1186/s13321-024-00840-1","DOIUrl":null,"url":null,"abstract":"<p>Chemical reaction optimization (RO) is an iterative process that results in large, high-dimensional datasets. Current tools allow for only limited analysis and understanding of parameter spaces, making it hard for scientists to review or follow changes throughout the process. With the recent emergence of using artificial intelligence (AI) models to aid RO, another level of complexity has been added. Helping to assess the quality of a model’s prediction and understand its decision is critical to supporting human-AI collaboration and trust calibration. To address this, we propose CIME4R—an open-source interactive web application for analyzing RO data and AI predictions. CIME4R supports users in <i>(</i><i>i</i><i>)</i> comprehending a reaction parameter space, <i>(</i><i>ii</i><i>)</i> investigating how an RO process developed over iterations, <i>(</i><i>iii</i><i>)</i> identifying critical factors of a reaction, and <i>(</i><i>iv</i><i>)</i> understanding model predictions. This facilitates making informed decisions during the RO process and helps users to review a completed RO process, especially in AI-guided RO. CIME4R aids decision-making through the interaction between humans and AI by combining the strengths of expert experience and high computational precision. We developed and tested CIME4R with domain experts and verified its usefulness in three case studies. Using CIME4R the experts were able to produce valuable insights from past RO campaigns and to make informed decisions on which experiments to perform next. We believe that CIME4R is the beginning of an open-source community project with the potential to improve the workflow of scientists working in the reaction optimization domain.</p>","PeriodicalId":617,"journal":{"name":"Journal of Cheminformatics","volume":"16 1","pages":""},"PeriodicalIF":7.1000,"publicationDate":"2024-05-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00840-1","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Cheminformatics","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1186/s13321-024-00840-1","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

Abstract

Chemical reaction optimization (RO) is an iterative process that results in large, high-dimensional datasets. Current tools allow for only limited analysis and understanding of parameter spaces, making it hard for scientists to review or follow changes throughout the process. With the recent emergence of using artificial intelligence (AI) models to aid RO, another level of complexity has been added. Helping to assess the quality of a model’s prediction and understand its decision is critical to supporting human-AI collaboration and trust calibration. To address this, we propose CIME4R—an open-source interactive web application for analyzing RO data and AI predictions. CIME4R supports users in (i) comprehending a reaction parameter space, (ii) investigating how an RO process developed over iterations, (iii) identifying critical factors of a reaction, and (iv) understanding model predictions. This facilitates making informed decisions during the RO process and helps users to review a completed RO process, especially in AI-guided RO. CIME4R aids decision-making through the interaction between humans and AI by combining the strengths of expert experience and high computational precision. We developed and tested CIME4R with domain experts and verified its usefulness in three case studies. Using CIME4R the experts were able to produce valuable insights from past RO campaigns and to make informed decisions on which experiments to perform next. We believe that CIME4R is the beginning of an open-source community project with the potential to improve the workflow of scientists working in the reaction optimization domain.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
CIME4R:在参数空间探索人工智能引导的化学反应迭代优化活动。
化学反应优化(RO)是一个迭代过程,会产生大量高维数据集。目前的工具只能对参数空间进行有限的分析和理解,因此科学家很难在整个过程中审查或跟踪变化。随着最近出现使用人工智能(AI)模型来辅助 RO 的方法,复杂性又增加了一层。帮助评估模型预测的质量并理解其决策对于支持人机协作和信任校准至关重要。为此,我们提出了 CIME4R--一个用于分析 RO 数据和人工智能预测的开源交互式网络应用程序。CIME4R 支持用户:(i) 理解反应参数空间;(ii) 研究 RO 过程如何在迭代中发展;(iii) 识别反应的关键因素;(iv) 理解模型预测。这有助于在 RO 过程中做出明智决策,并帮助用户回顾已完成的 RO 过程,尤其是在人工智能指导的 RO 过程中。CIME4R 结合了专家经验和高计算精度的优势,通过人机交互辅助决策。我们与领域专家共同开发和测试了 CIME4R,并在三个案例研究中验证了其实用性。使用 CIME4R,专家们能够从过去的 RO 活动中获得有价值的见解,并就下一步进行哪些实验做出明智的决策。我们相信,CIME4R 是一个开源社区项目的开端,有望改善科学家在反应优化领域的工作流程。科学贡献: 据我们所知,CIME4R 是首个针对反应优化(RO)活动的特殊分析需求量身定制的开源交互式网络应用程序。鉴于人工智能在反应优化活动中的应用日益广泛,我们在开发 CIME4R 时特别注重促进人与人工智能之间的协作以及对人工智能模型的理解。我们与领域专家合作开发并评估了 CIME4R,以验证其实用性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Journal of Cheminformatics
Journal of Cheminformatics CHEMISTRY, MULTIDISCIPLINARY-COMPUTER SCIENCE, INFORMATION SYSTEMS
CiteScore
14.10
自引率
7.00%
发文量
82
审稿时长
3 months
期刊介绍: Journal of Cheminformatics is an open access journal publishing original peer-reviewed research in all aspects of cheminformatics and molecular modelling. Coverage includes, but is not limited to: chemical information systems, software and databases, and molecular modelling, chemical structure representations and their use in structure, substructure, and similarity searching of chemical substance and chemical reaction databases, computer and molecular graphics, computer-aided molecular design, expert systems, QSAR, and data mining techniques.
期刊最新文献
GT-NMR: a novel graph transformer-based approach for accurate prediction of NMR chemical shifts Suitability of large language models for extraction of high-quality chemical reaction dataset from patent literature Molecular identification via molecular fingerprint extraction from atomic force microscopy images A systematic review of deep learning chemical language models in recent era Accelerated hit identification with target evaluation, deep learning and automated labs: prospective validation in IRAK1
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1