Deleterious mutation/epimutation-selection balance with and without inbreeding: a population (epi)genetics model.

IF 3.3 3区 生物学 Q2 GENETICS & HEREDITY Genetics Pub Date : 2024-07-08 DOI:10.1093/genetics/iyae080
Gregory Chernomas, Cortland K Griswold
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Abstract

Epigenetics in the form of DNA methylation and other processes is an established property of genotypes and a focus of empirical research. Yet, there remain fundamental gaps in the evolutionary theory of epigenetics. To support a comprehensive understanding of epigenetics, this paper investigates theoretically the combined effects of deleterious mutation and epimutation with and without inbreeding. Both spontaneous epimutation and paramutation are considered to cover a broader range of epigenetic phenomena. We find that inbreeding generally reduces the amount of segregating deleterious genetic and epigenetic variation at equilibrium, although interestingly inbreeding can also increase the amount of deleterious genetic or epigenetic variation. Furthermore, we also demonstrate that epimutation indirectly can cause increased or decreased deleterious genetic variation at equilibrium relative to classic expectations, which is particularly evident when paramutation is occurring. With the addition of deleterious epimutation, there may be significantly increased purging of deleterious variation in more inbred populations and a significantly increased amount of segregating deleterious variation in more outbred populations, with notable exceptions.

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有近亲繁殖和无近亲繁殖的有害突变/非突变-选择平衡:种群(外显子)遗传学模型。
DNA 甲基化和其他过程形式的表观遗传学是基因型的既定属性,也是实证研究的重点。然而,表观遗传学的进化理论仍存在根本性的空白。为了支持对表观遗传学的全面理解,本文从理论上研究了近交和不近交情况下有害突变和表观突变的综合效应。自发表观突变和参数突变都被考虑在内,以涵盖更广泛的表观遗传现象。我们发现,近亲繁殖通常会减少平衡状态下的分离性有害遗传和表观遗传变异的数量,但有趣的是,近亲繁殖也会增加有害遗传或表观遗传变异的数量。此外,我们还证明,相对于传统预期,表观突变可间接导致平衡态下有害遗传变异的增加或减少,这在发生参数突变时尤为明显。随着有害表观突变的增加,在更多的近交种群中,有害变异的清除量可能会显著增加,而在更多的远交种群中,分离的有害变异量可能会显著增加,但也有明显的例外。
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来源期刊
Genetics
Genetics GENETICS & HEREDITY-
CiteScore
6.90
自引率
6.10%
发文量
177
审稿时长
1.5 months
期刊介绍: GENETICS is published by the Genetics Society of America, a scholarly society that seeks to deepen our understanding of the living world by advancing our understanding of genetics. Since 1916, GENETICS has published high-quality, original research presenting novel findings bearing on genetics and genomics. The journal publishes empirical studies of organisms ranging from microbes to humans, as well as theoretical work. While it has an illustrious history, GENETICS has changed along with the communities it serves: it is not your mentor''s journal. The editors make decisions quickly – in around 30 days – without sacrificing the excellence and scholarship for which the journal has long been known. GENETICS is a peer reviewed, peer-edited journal, with an international reach and increasing visibility and impact. All editorial decisions are made through collaboration of at least two editors who are practicing scientists. GENETICS is constantly innovating: expanded types of content include Reviews, Commentary (current issues of interest to geneticists), Perspectives (historical), Primers (to introduce primary literature into the classroom), Toolbox Reviews, plus YeastBook, FlyBook, and WormBook (coming spring 2016). For particularly time-sensitive results, we publish Communications. As part of our mission to serve our communities, we''ve published thematic collections, including Genomic Selection, Multiparental Populations, Mouse Collaborative Cross, and the Genetics of Sex.
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