Retrosynthesis Zero: Self-Improving Global Synthesis Planning Using Reinforcement Learning

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2024-05-15 DOI:10.1021/acs.jctc.4c00071
Jiasheng Guo, Chenning Yu, Kenan Li, Yijian Zhang, Guoqiang Wang, Shuhua Li* and Hao Dong*, 
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Abstract

The field of computer-aided synthesis planning (CASP) has witnessed significant growth in recent years. Still, many CASP programs rely on large data sets to train neural networks, resulting in limitations due to the data quality and prior knowledge from chemists. In response, we propose Retrosynthesis Zero (ReSynZ), a reaction template-based method that combines Monte Carlo Tree Search with reinforcement learning inspired by AlphaGo Zero. Unlike other single-step reaction template-based CASP methods, ReSynZ takes complete synthesis paths for complex molecules, determined by reaction rules, as input for training the neural network. ReSynZ enables neural networks trained with relatively small reaction data sets (tens of thousands of data) to generate multiple synthesis pathways for a target molecule and suggest possible reaction conditions. On multiple data sets of molecular retrosynthesis, ReSynZ demonstrates excellent predictive performance compared to existing algorithms. The advantages, such as self-improving model features, flexible reward settings, the potential to surpass human limitations in chemical synthesis route planning, and others, make ReSynZ a valuable tool in chemical synthesis design.

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逆合成零:利用强化学习自我改进全局合成规划。
近年来,计算机辅助合成规划(CASP)领域取得了长足的发展。尽管如此,许多 CASP 程序仍依赖于大型数据集来训练神经网络,从而受到数据质量和化学家先验知识的限制。为此,我们提出了一种基于反应模板的方法--Retrosynthesis Zero (ReSynZ),它将蒙特卡洛树搜索与受 AlphaGo Zero 启发的强化学习相结合。与其他基于单步反应模板的 CASP 方法不同,ReSynZ 将由反应规则确定的复杂分子的完整合成路径作为训练神经网络的输入。ReSynZ 使使用相对较小的反应数据集(数万个数据)训练的神经网络能够生成目标分子的多种合成路径,并提出可能的反应条件。与现有算法相比,ReSynZ 在分子逆合成的多个数据集上表现出卓越的预测性能。自改进模型特征、灵活的奖励设置、在化学合成路线规划中超越人类局限的潜力等优势,使 ReSynZ 成为化学合成设计中的重要工具。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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