Uncoupled: investigating the lack of correlation between the transcription of putative plastic-degrading genes in the global ocean microbiome and marine plastic pollution.

IF 6.2 2区 环境科学与生态学 Q1 GENETICS & HEREDITY Environmental Microbiome Pub Date : 2024-05-15 DOI:10.1186/s40793-024-00575-4
Victor Gambarini, Cornelis J Drost, Joanne M Kingsbury, Louise Weaver, Olga Pantos, Kim M Handley, Gavin Lear
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Abstract

Background: Plastic pollution is a severe threat to marine ecosystems. While some microbial enzymes can degrade certain plastics, the ability of the global ocean microbiome to break down diverse environmental plastics remains limited. We employed metatranscriptomic data from an international ocean survey to explore global and regional patterns in microbial plastic degradation potential.

Results: On a global oceanic scale, we found no significant correlation between levels of plastic pollution and the expression of genes encoding enzymes putatively identified as capable of plastic degradation. Even when looking at different regional scales, ocean depth layers, or plastic types, we found no strong or even moderate correlation between plastic pollution and relative abundances of transcripts for enzymes with presumed plastic biodegradation potential. Our data, however, indicate that microorganisms in the Southern Ocean show a higher potential for plastic degradation, making them more appealing candidates for bioprospecting novel plastic-degrading enzymes.

Conclusion: Our research contributes to understanding the complex global relationship between plastic pollution and microbial plastic degradation potential. We reveal that the transcription of putative plastic-degrading genes in the global ocean microbiome does not correlate to marine plastic pollution, highlighting the ongoing danger that plastic poses to marine environments threatened by plastic pollution.

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脱钩:研究全球海洋微生物组中假定的塑料降解基因的转录与海洋塑料污染之间缺乏相关性。
背景:塑料污染是对海洋生态系统的严重威胁。虽然一些微生物酶可以降解某些塑料,但全球海洋微生物组分解各种环境塑料的能力仍然有限。我们利用来自国际海洋调查的元转录组数据来探索微生物塑料降解潜力的全球和区域模式:结果:在全球海洋范围内,我们发现塑料污染水平与被认为能够降解塑料的酶编码基因的表达之间没有明显的相关性。即使观察不同的区域尺度、海洋深度层或塑料类型,我们也没有发现塑料污染与假定具有塑料生物降解潜力的酶的转录本相对丰度之间有很强甚至中等程度的相关性。然而,我们的数据表明,南大洋的微生物具有更高的降解塑料的潜力,这使它们成为生物勘探新型塑料降解酶的更有吸引力的候选者:我们的研究有助于理解塑料污染与微生物降解塑料潜力之间复杂的全球关系。我们发现,全球海洋微生物组中假定的塑料降解基因的转录与海洋塑料污染并不相关,这突显了塑料对受塑料污染威胁的海洋环境构成的持续危险。
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来源期刊
Environmental Microbiome
Environmental Microbiome Immunology and Microbiology-Microbiology
CiteScore
7.40
自引率
2.50%
发文量
55
审稿时长
13 weeks
期刊介绍: Microorganisms, omnipresent across Earth's diverse environments, play a crucial role in adapting to external changes, influencing Earth's systems and cycles, and contributing significantly to agricultural practices. Through applied microbiology, they offer solutions to various everyday needs. Environmental Microbiome recognizes the universal presence and significance of microorganisms, inviting submissions that explore the diverse facets of environmental and applied microbiological research.
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