Histone ubiquitination: Role in genome integrity and chromatin organization

IF 2.6 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Biochimica et Biophysica Acta-Gene Regulatory Mechanisms Pub Date : 2024-05-17 DOI:10.1016/j.bbagrm.2024.195044
Nikhil Baban Ghate , Kaustubh Sanjay Nadkarni , Ganesh Kumar Barik , Sharad Shriram Tat , Osheen Sahay , Manas Kumar Santra
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Abstract

Maintenance of genome integrity is a precise but tedious and complex job for the cell. Several post-translational modifications (PTMs) play vital roles in maintaining the genome integrity. Although ubiquitination is one of the most crucial PTMs, which regulates the localization and stability of the nonhistone proteins in various cellular and developmental processes, ubiquitination of the histones is a pivotal epigenetic event critically regulating chromatin architecture. In addition to genome integrity, importance of ubiquitination of core histones (H2A, H2A, H3, and H4) and linker histone (H1) have been reported in several cellular processes. However, the complex interplay of histone ubiquitination and other PTMs, as well as the intricate chromatin architecture and dynamics, pose a significant challenge to unravel how histone ubiquitination safeguards genome stability. Therefore, further studies are needed to elucidate the interactions between histone ubiquitination and other PTMs, and their role in preserving genome integrity. Here, we review all types of histone ubiquitinations known till date in maintaining genomic integrity during transcription, replication, cell cycle, and DNA damage response processes. In addition, we have also discussed the role of histone ubiquitination in regulating other histone PTMs emphasizing methylation and acetylation as well as their potential implications in chromatin architecture. Further, we have also discussed the involvement of deubiquitination enzymes (DUBs) in controlling histone ubiquitination in modulating cellular processes.

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组蛋白泛素化:组蛋白泛素化:在基因组完整性和染色质组织中的作用
对细胞来说,保持基因组的完整性是一项精确但繁琐复杂的工作。一些翻译后修饰(PTM)在保持基因组完整性方面发挥着重要作用。泛素化是最关键的 PTM 之一,它在各种细胞和发育过程中调节非组蛋白的定位和稳定性,而组蛋白的泛素化则是关键的表观遗传事件,对染色质结构起着至关重要的调节作用。除基因组完整性外,有报道称核心组蛋白(H2A、H2A、H3 和 H4)和连接组蛋白(H1)的泛素化在多个细胞过程中也很重要。然而,组蛋白泛素化与其他 PTMs 之间复杂的相互作用,以及错综复杂的染色质结构和动态变化,给揭示组蛋白泛素化如何保障基因组稳定性带来了巨大挑战。因此,需要进一步的研究来阐明组蛋白泛素化和其他 PTM 之间的相互作用及其在维护基因组完整性中的作用。在此,我们回顾了迄今已知的组蛋白泛素化在转录、复制、细胞周期和 DNA 损伤应答过程中维护基因组完整性的所有类型。此外,我们还讨论了组蛋白泛素化在调节其他组蛋白 PTMs(强调甲基化和乙酰化)中的作用及其在染色质结构中的潜在影响。此外,我们还讨论了去泛素化酶(DUBs)在控制组蛋白泛素化调节细胞过程中的参与。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
9.20
自引率
2.10%
发文量
63
审稿时长
44 days
期刊介绍: BBA Gene Regulatory Mechanisms includes reports that describe novel insights into mechanisms of transcriptional, post-transcriptional and translational gene regulation. Special emphasis is placed on papers that identify epigenetic mechanisms of gene regulation, including chromatin, modification, and remodeling. This section also encompasses mechanistic studies of regulatory proteins and protein complexes; regulatory or mechanistic aspects of RNA processing; regulation of expression by small RNAs; genomic analysis of gene expression patterns; and modeling of gene regulatory pathways. Papers describing gene promoters, enhancers, silencers or other regulatory DNA regions must incorporate significant functions studies.
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