Hydrogen bond analysis of the p-coumaric acid-nicotinamide cocrystal using the DFT and AIM method

IF 0.5 Q4 EDUCATION, SCIENTIFIC DISCIPLINES Pharmacy Education Pub Date : 2024-05-01 DOI:10.46542/pe.2024.243.5762
F. Pujiono, Dwi Setyawan, J. Ekowati
{"title":"Hydrogen bond analysis of the p-coumaric acid-nicotinamide cocrystal using the DFT and AIM method","authors":"F. Pujiono, Dwi Setyawan, J. Ekowati","doi":"10.46542/pe.2024.243.5762","DOIUrl":null,"url":null,"abstract":"Background: The molecular geometric structure of p-coumaric acid-nicotinamide has been optimised using Density Functional Theory (DFT) and Atom In Molecule (AIM).    \nObjective: To analyse the hydrogen bond of the p-coumaric acid–nicotinamide cocrystal.    \nMethod: Structural optimisation using DFT was carried out on the basis set B3LYP/6-311G++ (d, p). The electron density topology from the optimisation results obtained was then validated using the Non-Covalent Interaction (NCI) method.    \nResult: Optimisation results showed that there are intermolecular hydrogen bonds in the carbonyl group of p-coumaric acid and the amine group of nicotinamide, namely C1=O11∙∙∙O34 with length 1.804 Å. On the other hand, the results of the topology test with AIM showed a value of ∇2ρ = 0.1196 a.u; G = 0.0393 a.u; H = 0.0946 a.u; V = -0.0488 a.u which means there was an intermolecular Hydrogen bond with EH∙∙∙O = -64.05 a.u.    \nConclusion: A hydrogen bond in the cocrystal of p-coumaric acid-nicotinamide is classified as an intermolecular hydrogen bond between the carbonyl group of p-coumaric acid and the amine group in the carboxyl group.","PeriodicalId":19944,"journal":{"name":"Pharmacy Education","volume":null,"pages":null},"PeriodicalIF":0.5000,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Pharmacy Education","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.46542/pe.2024.243.5762","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"EDUCATION, SCIENTIFIC DISCIPLINES","Score":null,"Total":0}
引用次数: 0

Abstract

Background: The molecular geometric structure of p-coumaric acid-nicotinamide has been optimised using Density Functional Theory (DFT) and Atom In Molecule (AIM).     Objective: To analyse the hydrogen bond of the p-coumaric acid–nicotinamide cocrystal.     Method: Structural optimisation using DFT was carried out on the basis set B3LYP/6-311G++ (d, p). The electron density topology from the optimisation results obtained was then validated using the Non-Covalent Interaction (NCI) method.     Result: Optimisation results showed that there are intermolecular hydrogen bonds in the carbonyl group of p-coumaric acid and the amine group of nicotinamide, namely C1=O11∙∙∙O34 with length 1.804 Å. On the other hand, the results of the topology test with AIM showed a value of ∇2ρ = 0.1196 a.u; G = 0.0393 a.u; H = 0.0946 a.u; V = -0.0488 a.u which means there was an intermolecular Hydrogen bond with EH∙∙∙O = -64.05 a.u.     Conclusion: A hydrogen bond in the cocrystal of p-coumaric acid-nicotinamide is classified as an intermolecular hydrogen bond between the carbonyl group of p-coumaric acid and the amine group in the carboxyl group.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
使用 DFT 和 AIM 方法分析对香豆酸-烟酰胺共晶体的氢键
背景:利用密度泛函理论(DFT)和原子内分子(AIM)优化了对香豆酸-烟酰胺的分子几何结构。 研究目的分析对香豆酸-烟酰胺共晶体的氢键。 方法:利用 DFT 进行结构优化:使用 DFT 在 B3LYP/6-311G++ (d, p) 基础上进行结构优化。然后使用非共价相互作用(NCI)方法验证了从优化结果中得到的电子密度拓扑结构。 结果:优化结果表明,对香豆酸的羰基和烟酰胺的胺基存在分子间氢键,即长度为 1.804 Å 的 C1=O11∙∙O34。另一方面,用 AIM 进行拓扑测试的结果显示:∇2ρ = 0.1196 a.u;G = 0.0393 a.u;H = 0.0946 a.u;V = -0.0488 a.u,这意味着存在分子间氢键,EH∙∙O = -64.05 a.u:对香豆酸-烟酰胺共晶体中的氢键属于对香豆酸的羰基与羧基中的胺基之间的分子间氢键。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Pharmacy Education
Pharmacy Education EDUCATION, SCIENTIFIC DISCIPLINES-
CiteScore
0.80
自引率
20.00%
发文量
174
期刊介绍: Pharmacy Education journal provides a research, development and evaluation forum for communication between academic teachers, researchers and practitioners in professional and pharmacy education, with an emphasis on new and established teaching and learning methods, new curriculum and syllabus directions, educational outcomes, guidance on structuring courses and assessing achievement, and workforce development. It is a peer-reviewed online open access platform for the dissemination of new ideas in professional pharmacy education and workforce development. Pharmacy Education supports Open Access (OA): free, unrestricted online access to research outputs. Readers are able to access the Journal and individual published articles for free - there are no subscription fees or ''pay per view'' charges. Authors wishing to publish their work in Pharmacy Education do so without incurring any financial costs.
期刊最新文献
Antioxidant activity of Bougainvillea spectabilis ethanol extracts as an aryl hydrocarbon inhibitor Healthcare collaboration intervention: Pre-post study Development and a validation study of comprehensive prescription writing rubrics for medical students Listener, member, and advisor perspectives regarding a pharmacy podcast student organisation Stakeholder perspectives on the need for professional education and competence in pharmacovigilance in Zambia: A cross-sectional survey
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1