The first mitogenomic phylogenetic framework of Dorcus sensu lato (Coleoptera: Lucanidae), with an emphasis on generic taxonomy in Eastern Asia.

IF 2.3 Q2 ECOLOGY BMC ecology and evolution Pub Date : 2024-05-21 DOI:10.1186/s12862-024-02225-2
Muhammad Jafir, Liyang Zhou, Yongjing Chen, Xia Wan
{"title":"The first mitogenomic phylogenetic framework of Dorcus sensu lato (Coleoptera: Lucanidae), with an emphasis on generic taxonomy in Eastern Asia.","authors":"Muhammad Jafir, Liyang Zhou, Yongjing Chen, Xia Wan","doi":"10.1186/s12862-024-02225-2","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Dorcus stag beetles in broad sense are one of the most diverse group in Lucanidae and important saproxylic insects playing a crucial role in nutrient recycling and forest biomonitoring. However, the dazzling morphological differentiations have caused numerous systematic confusion within the big genus, especially the puzzlingly generic taxonomy. So far, there is lack of molecular phylogenetic study to address the chaotic situation. In this study, we undertook mitochondrial genome sequencing of 42 representative species including 18 newly-sequenced ones from Eastern Asia and reconstructed the phylogenetic framework of stag beetles in Dorcus sensu lato for the first time.</p><p><strong>Results: </strong>The mitogenome datasets of Dorcus species have indicated the variable mitogenomic lengths ranged from 15,785 to 19,813 bp. Each mitogenome contained 13 PCGs, 2 rRNAs, 22 tRNAs, and a control region, and all PCGs were under strong purifying selection (Ka/Ks < 1). Notably, we have identified the presence of a substantial intergenic spacer (IGS) between the trnA<sup>ser (UCN)</sup> and NAD1 genes, with varying lengths ranging from 129 bp (in D. hansi) to 158 bp (in D. tityus). The mitogenomic phylogenetic analysis of 42 species showed that Eastern Asia Dorcus was monophyletic, and divided into eight clades with significant genetic distance. Four of them, Clade VIII, VII, VI and I are clustered by the representative species of Serrognathus Motschulsky, Kirchnerius Schenk, Falcicornis Séguy and Dorcus s.s. respectively, which supported their fully generic positions as the previous morphological study presented. The topology also showed the remaining clades were distinctly separated from the species of Dorcus sensu lato, which implied that each of them might demonstrate independent generic status. The Linnaeus nomenclatures were suggested as Eurydorcus Didier stat. res., Eurytrachellelus Didier stat. res., Hemisodorcus Thomson stat. res. and Velutinodorcus Maes stat. res. For Clade V, IV, III and II respectively.</p><p><strong>Conclusion: </strong>This study recognized the monophyly of Dorcus stag beetles and provided a framework for the molecular phylogeny of this group for the first time. The newly generated mitogenomic data serves as a valuable resource for future investigations on lucanid beetles. The generic relationship would facilitate the systematics of Dorcus stag beetles and thus be useful for exploring their evolutionary, ecological, and conservation aspects.</p>","PeriodicalId":93910,"journal":{"name":"BMC ecology and evolution","volume":"24 1","pages":"66"},"PeriodicalIF":2.3000,"publicationDate":"2024-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11107052/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"BMC ecology and evolution","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s12862-024-02225-2","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ECOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Background: Dorcus stag beetles in broad sense are one of the most diverse group in Lucanidae and important saproxylic insects playing a crucial role in nutrient recycling and forest biomonitoring. However, the dazzling morphological differentiations have caused numerous systematic confusion within the big genus, especially the puzzlingly generic taxonomy. So far, there is lack of molecular phylogenetic study to address the chaotic situation. In this study, we undertook mitochondrial genome sequencing of 42 representative species including 18 newly-sequenced ones from Eastern Asia and reconstructed the phylogenetic framework of stag beetles in Dorcus sensu lato for the first time.

Results: The mitogenome datasets of Dorcus species have indicated the variable mitogenomic lengths ranged from 15,785 to 19,813 bp. Each mitogenome contained 13 PCGs, 2 rRNAs, 22 tRNAs, and a control region, and all PCGs were under strong purifying selection (Ka/Ks < 1). Notably, we have identified the presence of a substantial intergenic spacer (IGS) between the trnAser (UCN) and NAD1 genes, with varying lengths ranging from 129 bp (in D. hansi) to 158 bp (in D. tityus). The mitogenomic phylogenetic analysis of 42 species showed that Eastern Asia Dorcus was monophyletic, and divided into eight clades with significant genetic distance. Four of them, Clade VIII, VII, VI and I are clustered by the representative species of Serrognathus Motschulsky, Kirchnerius Schenk, Falcicornis Séguy and Dorcus s.s. respectively, which supported their fully generic positions as the previous morphological study presented. The topology also showed the remaining clades were distinctly separated from the species of Dorcus sensu lato, which implied that each of them might demonstrate independent generic status. The Linnaeus nomenclatures were suggested as Eurydorcus Didier stat. res., Eurytrachellelus Didier stat. res., Hemisodorcus Thomson stat. res. and Velutinodorcus Maes stat. res. For Clade V, IV, III and II respectively.

Conclusion: This study recognized the monophyly of Dorcus stag beetles and provided a framework for the molecular phylogeny of this group for the first time. The newly generated mitogenomic data serves as a valuable resource for future investigations on lucanid beetles. The generic relationship would facilitate the systematics of Dorcus stag beetles and thus be useful for exploring their evolutionary, ecological, and conservation aspects.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
首次建立了鞘翅目:琉球科(Dorcus sensu lato)的有丝分裂系统发育框架,重点是东亚的属分类学。
背景:广义上的锹形虫是锹形虫科最多样化的类群之一,也是重要的有食性昆虫,在养分循环和森林生物监测中发挥着至关重要的作用。然而,令人眼花缭乱的形态分化造成了该大属内众多的系统混乱,尤其是令人费解的属分类法。迄今为止,还缺乏针对这一混乱局面的分子系统学研究。在本研究中,我们对包括18个来自东亚的新测序物种在内的42个代表性物种进行了线粒体基因组测序,首次重建了Dorcus sensu lato中锹形虫的系统发育框架:结果:Dorcus物种的有丝分裂基因组数据集显示,有丝分裂基因组长度从15785到19813 bp不等。每个有丝分裂基因组包含 13 个 PCGs、2 个 rRNAs、22 个 tRNAs 和一个控制区,所有 PCGs 都处于强净化选择(Ka/Ks ser (UCN) 和 NAD1 基因)下,长度从 129 bp(D. hansi)到 158 bp(D. tityus)不等。对 42 个物种的有丝分裂基因组系统进化分析表明,东亚多克鲁斯为单系,分为 8 个具有显著遗传距离的支系。其中第 VIII、VII、VI 和 I 支系分别由 Serrognathus Motschulsky、Kirchnerius Schenk、Falcicornis Séguy 和 Dorcus s.s.的代表种聚类而成,这支持了之前形态学研究提出的它们的全属地位。拓扑结构还表明,其余支系与普通多科斯种明显分开,这意味着它们可能各自具有独立的属种地位。林奈命名法建议将其分别命名为 Eurydorcus Didier stat.分别为支系 V、IV、III 和 II:该研究首次确认了多科锹形虫的单系性,并为该类群的分子系统学提供了一个框架。新生成的有丝分裂基因组数据是今后研究锹形目甲虫的宝贵资源。其属种关系将促进多科斯锹形虫的系统学研究,从而有助于探索其进化、生态和保护方面的问题。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
The gut microbiota of three avian species living in sympatry. Greater risk-taking by non-native than native shrimp: an advantage in a human-disturbed environment? Survival cost sharing among altruistic full siblings in Mendelian population. Next-generation phylogeography reveals unanticipated population history and climate and human impacts on the endangered floodplain bitterling (Acheilognathus longipinnis). Repeated evolution on oceanic islands: comparative genomics reveals species-specific processes in birds.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1