Capillary blood self-collection for high-throughput proteomics

IF 3.4 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Proteomics Pub Date : 2024-05-24 DOI:10.1002/pmic.202300607
Bassim El-Sabawi, Shi Huang, Kahraman Tanriverdi, Andrew S. Perry, Kaushik Amancherla, Natalie Jackson, Jenna Hulsey, Jane E. Freedman, Ravi Shah, Brian R. Lindman
{"title":"Capillary blood self-collection for high-throughput proteomics","authors":"Bassim El-Sabawi,&nbsp;Shi Huang,&nbsp;Kahraman Tanriverdi,&nbsp;Andrew S. Perry,&nbsp;Kaushik Amancherla,&nbsp;Natalie Jackson,&nbsp;Jenna Hulsey,&nbsp;Jane E. Freedman,&nbsp;Ravi Shah,&nbsp;Brian R. Lindman","doi":"10.1002/pmic.202300607","DOIUrl":null,"url":null,"abstract":"<p>In this study, we sought to compare protein concentrations obtained from a high-throughput proteomics platform (Olink) on samples collected using capillary blood self-collection (with the Tasso+ device) versus standard venipuncture (control). Blood collection was performed on 20 volunteers, including one sample obtained via venipuncture and two via capillary blood using the Tasso+ device. Tasso+ samples were stored at 2°C–8°C for 24-hs (Tasso-24) or 48-h (Tasso-48) prior to processing to simulate shipping times from a study participant's home. Proteomics were analyzed using Olink (384 Inflammatory Panel). Tasso+ blood collection was successful in 37/40 attempts. Of 230 proteins included in our analysis, Pearson correlations (<i>r)</i> and mean coefficient of variation (CV) between Tasso-24 or Tasso-48 versus venipuncture were variable. In the Tasso-24 analysis, 34 proteins (14.8%) had both a correlation <i>r &gt;</i> 0.5 and CV &lt; 0.20. In the Tasso-48 analysis, 68 proteins (29.6%) had a correlation <i>r &gt;</i> 0.5 and CV &lt; 0.20. Combining the Tasso-24 and Tasso-48 analyses, 26 (11.3%) proteins met these thresholds. We concluded that protein concentrations from Tasso+ samples processed 24–48 h after collection demonstrated wide technical variability and variable correlation with a venipuncture gold-standard. Use of home capillary blood self-collection for large-scale proteomics should be limited to select proteins with good agreement with venipuncture.</p>","PeriodicalId":224,"journal":{"name":"Proteomics","volume":"24 16","pages":""},"PeriodicalIF":3.4000,"publicationDate":"2024-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/pmic.202300607","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proteomics","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/pmic.202300607","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

Abstract

In this study, we sought to compare protein concentrations obtained from a high-throughput proteomics platform (Olink) on samples collected using capillary blood self-collection (with the Tasso+ device) versus standard venipuncture (control). Blood collection was performed on 20 volunteers, including one sample obtained via venipuncture and two via capillary blood using the Tasso+ device. Tasso+ samples were stored at 2°C–8°C for 24-hs (Tasso-24) or 48-h (Tasso-48) prior to processing to simulate shipping times from a study participant's home. Proteomics were analyzed using Olink (384 Inflammatory Panel). Tasso+ blood collection was successful in 37/40 attempts. Of 230 proteins included in our analysis, Pearson correlations (r) and mean coefficient of variation (CV) between Tasso-24 or Tasso-48 versus venipuncture were variable. In the Tasso-24 analysis, 34 proteins (14.8%) had both a correlation r > 0.5 and CV < 0.20. In the Tasso-48 analysis, 68 proteins (29.6%) had a correlation r > 0.5 and CV < 0.20. Combining the Tasso-24 and Tasso-48 analyses, 26 (11.3%) proteins met these thresholds. We concluded that protein concentrations from Tasso+ samples processed 24–48 h after collection demonstrated wide technical variability and variable correlation with a venipuncture gold-standard. Use of home capillary blood self-collection for large-scale proteomics should be limited to select proteins with good agreement with venipuncture.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
用于高通量蛋白质组学的毛细管自采血。
在这项研究中,我们试图比较高通量蛋白质组学平台(Olink)通过毛细管自采血(使用 Tasso+ 设备)和标准静脉穿刺(对照组)采集的样本的蛋白质浓度。对 20 名志愿者进行了血液采集,包括通过静脉穿刺采集的一份样本和使用 Tasso+ 设备通过毛细管采血采集的两份样本。Tasso+样本在处理前在2°C-8°C下保存24小时(Tasso-24)或48小时(Tasso-48),以模拟从研究参与者家中运送样本的时间。使用 Olink(384 炎症面板)分析蛋白质组学。有 37/40 次成功采集了 Tasso+ 血液。在我们分析的 230 种蛋白质中,Tasso-24 或 Tasso-48 与静脉穿刺之间的皮尔逊相关性(r)和平均变异系数(CV)各不相同。在 Tasso-24 分析中,有 34 种蛋白质(14.8%)的相关性 r > 0.5,CV 0.5,CV
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Proteomics
Proteomics 生物-生化研究方法
CiteScore
6.30
自引率
5.90%
发文量
193
审稿时长
3 months
期刊介绍: PROTEOMICS is the premier international source for information on all aspects of applications and technologies, including software, in proteomics and other "omics". The journal includes but is not limited to proteomics, genomics, transcriptomics, metabolomics and lipidomics, and systems biology approaches. Papers describing novel applications of proteomics and integration of multi-omics data and approaches are especially welcome.
期刊最新文献
Advancements in Global Phosphoproteomics Profiling: Overcoming Challenges in Sensitivity and Quantification. Prediction of Lung Adenocarcinoma Driver Genes Through Protein-Protein Interaction Networks Utilizing GenePlexus. Key Regulators of Parasite Biology Viewed Through a Post-Translational Modification Repertoire. Front Cover Standard abbreviations
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1