Modeling the heterogeneous apoptotic response of caspase-mediated signaling in tumor cells

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-05-24 DOI:10.1016/j.jtbi.2024.111857
Diamond S. Mangrum , Stacey D. Finley
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引用次数: 0

Abstract

Resisting apoptosis is a hallmark of cancer. For this reason, it may be possible to force cancer cells to die by targeting components along the apoptotic signaling pathway. However, apoptosis signaling is challenging to understand due to dynamic and complex behaviors of ligands, receptors, and intracellular signaling components in response to cancer therapy. In this work, we forecast the apoptotic response based on the combined impact of these features. We expanded a previously established mathematical model of caspase-mediated apoptosis to include extracellular activation and receptor dynamics. In addition, three potential threshold values of caspase-3 necessary for the activation of apoptosis were selected to forecast which cells become apoptotic over time. We first vary ligand and receptor levels with the number of intracellular signaling proteins remaining consistent. Then, we vary the intracellular protein molecules in each simulated tumor cell to forecast the response of a heterogeneous population. By leveraging the benefits of computational modeling, we investigate the combined effect of several factors on the onset of apoptosis. This work provides quantitative insights for how the apoptotic signaling response can be forecasted, and precisely triggered, amongst heterogeneous cells via extracellular activation.

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模拟肿瘤细胞中由 Caspase 信号介导的异质性凋亡反应
抵抗细胞凋亡是癌症的一个特征。因此,有可能通过靶向凋亡信号通路上的成分来迫使癌细胞死亡。然而,由于配体、受体和细胞内信号元件在响应癌症治疗时的动态和复杂行为,凋亡信号的理解具有挑战性。在这项工作中,我们根据这些特征的综合影响来预测凋亡反应。我们扩展了之前建立的由 Caspase 介导的细胞凋亡数学模型,将细胞外激活和受体动态纳入其中。此外,我们还选择了激活细胞凋亡所需的 caspase-3 的三个潜在阈值,以预测哪些细胞会随着时间的推移而凋亡。我们首先改变配体和受体水平,细胞内信号蛋白的数量保持一致。然后,我们改变每个模拟肿瘤细胞中的胞内蛋白分子,以预测异质群体的反应。利用计算建模的优势,我们研究了多种因素对细胞凋亡发生的综合影响。这项工作为如何预测异质细胞通过细胞外激活而产生的凋亡信号反应并精确触发凋亡信号反应提供了定量见解。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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