CoSFISH: a comprehensive reference database of COI and 18S rRNA barcodes for fish.

IF 4.3 3区材料科学 Q1 ENGINEERING, ELECTRICAL & ELECTRONIC ACS Applied Electronic Materials Pub Date : 2024-05-27 DOI:10.1093/database/baae038

Yuanyuan Wang, Yexin Yang, Yi Liu, Chao Liu, Meng Xu, Miao Fang, Xidong Mu

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Abstract

Fish, being a crucial component of aquatic ecosystems, holds significant importance from both economic and ecological perspectives. However, the identification of fish at the species level remains challenging, and there is a lack of a taxonomically complete and comprehensive reference sequence database for fish. Therefore, we developed CoSFISH, an online fish database. Currently, the database contains 21 535 cytochrome oxidase I sequences and 1074 18S rRNA sequences of 21 589 species, belonging to 8 classes and 90 orders. We additionally incorporate online analysis tools to aid users in comparing, aligning and analyzing sequences, as well as designing primers. Users can upload their own data for analysis, in addition to using the data stored in the database directly. CoSFISH offers an extensive fish database and incorporates online analysis tools, making it a valuable resource for the study of fish diversity, phylogenetics and biological evolution. Database URL: http://210.22.121.250:8888/CoSFISH/home/indexPage.

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CoSFISH：鱼类 COI 和 18S rRNA 条形码综合参考数据库。

鱼类是水生生态系统的重要组成部分，在经济和生态方面都具有重要意义。然而，鱼类物种水平的鉴定仍然具有挑战性，而且缺乏一个在分类学上完整而全面的鱼类参考序列数据库。因此，我们开发了在线鱼类数据库 CoSFISH。目前，该数据库包含 21 535 个细胞色素氧化酶 I 序列和 1074 个 18S rRNA 序列，涉及 21 589 个物种，分属 8 类 90 目。此外，我们还提供在线分析工具，帮助用户比较、排列和分析序列以及设计引物。用户除了可以直接使用数据库中存储的数据外，还可以上传自己的数据进行分析。CoSFISH 提供了一个庞大的鱼类数据库，并集成了在线分析工具，是研究鱼类多样性、系统发生学和生物进化的宝贵资源。数据库网址：http://210.22.121.250:8888/CoSFISH/home/indexPage。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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