Biosynthesis of α-keto acids and resolution of chiral amino acids by l-amino acid deaminases from Proteus mirabilis

IF 1.4 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS Protein expression and purification Pub Date : 2024-05-29 DOI:10.1016/j.pep.2024.106518
Junzhang Chang , Yuxin Zhang , Zhiwei Li , Yunfeng Ma , Xueqin Hu , Jingwen Yang , Hongbin Zhang
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Abstract

Chiral amino acids and their deamination products, α-keto acids, have important applications in food, medicine, and fine chemicals. In this study, two l-amino acid deaminase genes from Proteus mirabilis, PM473 of type Ⅰ and PM471 of type Ⅱ were cloned and expressed in Escherichia coli respectively, expected to achieve the chiral separation of amino acids. Extensive substrate preference testing showed that both deaminases had catalytic effects on the d-amino acid component of the D, l-amino acids, and PM473 has a wider catalytic range for amino acids. When D, L-Cys was used as the substrate, all L-Cys components and 75.1 % of D-Cys were converted to mercapto pyruvate, and the remaining D-Cys was a single chiral enantiomer. Molecular docking analysis showed that the interaction between the substrate and the key residues affected the stereoselectivity of enzymes. The compatibility of hydrophobicity between the binding pocket and substrate may be the basic factor that affects the substrate selectivity. This work provides an alternative method for the production of α-keto acids and the resolution of chiral amino acids.

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奇异变形杆菌 L-氨基酸脱氨酶的 α-酮酸生物合成和手性氨基酸的解析。
手性氨基酸及其脱氨产物α-酮酸在食品、医药和精细化工领域有着重要的应用。本研究克隆了两种来自奇异变形杆菌的 L-氨基酸脱氨酶基因,即Ⅰ型的 PM473 和Ⅱ型的 PM471,并分别在大肠杆菌中表达,以实现氨基酸的手性分离。广泛的底物偏好测试表明,两种脱氨酶对 D、L-氨基酸中的 D-氨基酸成分都有催化作用,而 PM473 对氨基酸的催化范围更广。当以 D, L-Cys 为底物时,所有 L-Cys 成分和 75.1% 的 D-Cys 转化为丙酮酸巯基,剩余的 D-Cys 为单一手性对映体。分子对接分析表明,底物与关键残基之间的相互作用影响了酶的立体选择性。结合袋与底物之间疏水性的相容性可能是影响底物选择性的基本因素。这项工作为生产α-酮酸和解析手性氨基酸提供了另一种方法。
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来源期刊
Protein expression and purification
Protein expression and purification 生物-生化研究方法
CiteScore
3.70
自引率
6.20%
发文量
120
审稿时长
32 days
期刊介绍: Protein Expression and Purification is an international journal providing a forum for the dissemination of new information on protein expression, extraction, purification, characterization, and/or applications using conventional biochemical and/or modern molecular biological approaches and methods, which are of broad interest to the field. The journal does not typically publish repetitive examples of protein expression and purification involving standard, well-established, methods. However, exceptions might include studies on important and/or difficult to express and/or purify proteins and/or studies that include extensive protein characterization, which provide new, previously unpublished information.
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