Tom Bradfer‐Lawrence, Brad Duthie, Carlos Abrahams, Matyáš Adam, Ross J. Barnett, Amy Beeston, Jennifer Darby, Benedict Dell, Nick Gardner, Amandine Gasc, Becky Heath, Nia Howells, Magnus Janson, Maria‐Viktoria Kyoseva, Thomas Luypaert, Oliver C. Metcalf, Anna E. Nousek‐McGregor, Frederica Poznansky, Samuel R. P.‐J. Ross, Sarab Sethi, Siobhan Smyth, Emily Waddell, Jérémy S. P. Froidevaux
{"title":"The Acoustic Index User's Guide: A practical manual for defining, generating and understanding current and future acoustic indices","authors":"Tom Bradfer‐Lawrence, Brad Duthie, Carlos Abrahams, Matyáš Adam, Ross J. Barnett, Amy Beeston, Jennifer Darby, Benedict Dell, Nick Gardner, Amandine Gasc, Becky Heath, Nia Howells, Magnus Janson, Maria‐Viktoria Kyoseva, Thomas Luypaert, Oliver C. Metcalf, Anna E. Nousek‐McGregor, Frederica Poznansky, Samuel R. P.‐J. Ross, Sarab Sethi, Siobhan Smyth, Emily Waddell, Jérémy S. P. Froidevaux","doi":"10.1111/2041-210x.14357","DOIUrl":null,"url":null,"abstract":"<jats:list> <jats:list-item>Ecoacoustics, the study of environmental sound, is a rapidly growing discipline offering ecological insights at scales ranging from individual organisms to whole ecosystems. Substantial methodological developments over the last 15 years have streamlined extraction of ecological information from audio recordings. One widely used set of methods are acoustic indices, which offer numerical summaries of the spectral, temporal and amplitude patterns in audio recordings.</jats:list-item> <jats:list-item>Currently, the specifics of each index's background, methodology and the soundscape patterns they are designed to summarise, are spread across multiple sources. Critically, details of index calculation are sometimes scarce, making it challenging for users to understand how index values are generated. Discrepancies in understanding can lead to misuse of acoustic indices or reporting of spurious results. This hinders ecological inference, replicability and discourages adoption of these tools for conservation and ecosystem monitoring, where they might otherwise provide useful insight.</jats:list-item> <jats:list-item>Here we present the Acoustic Index User's Guide—an interactive RShiny web app that defines and deconstructs eight of the most commonly used acoustic indices to facilitate consistent application across the discipline. We break the acoustic indices calculations down into easy‐to‐follow steps to better enable practical application and critical interpretation of acoustic indices. We demonstrate typical soundscape patterns using a suite of 91 example audio recordings: 66 real‐world soundscapes from terrestrial, aquatic and subterranean systems around the world, and 25 synthetic files demonstrating archetypal soundscape patterns. Our interpretation figures signpost specific soundscape patterns likely to be reflected in acoustic indices' values.</jats:list-item> <jats:list-item>This RShiny app is a living resource; additional acoustic indices will be added in the future through collaboration with authors of pre‐existing and new indices. The app also serves as a best‐practice template for the information required when publishing new acoustic indices, so that authors can facilitate the widest possible understanding and uptake of their indices. In turn, improved understanding of acoustic indices will aid effective hypothesis generation, application and interpretation in ecological research, ecosystem monitoring and conservation management.</jats:list-item> </jats:list>","PeriodicalId":208,"journal":{"name":"Methods in Ecology and Evolution","volume":"3 1","pages":""},"PeriodicalIF":6.3000,"publicationDate":"2024-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Methods in Ecology and Evolution","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.1111/2041-210x.14357","RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ECOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Ecoacoustics, the study of environmental sound, is a rapidly growing discipline offering ecological insights at scales ranging from individual organisms to whole ecosystems. Substantial methodological developments over the last 15 years have streamlined extraction of ecological information from audio recordings. One widely used set of methods are acoustic indices, which offer numerical summaries of the spectral, temporal and amplitude patterns in audio recordings.Currently, the specifics of each index's background, methodology and the soundscape patterns they are designed to summarise, are spread across multiple sources. Critically, details of index calculation are sometimes scarce, making it challenging for users to understand how index values are generated. Discrepancies in understanding can lead to misuse of acoustic indices or reporting of spurious results. This hinders ecological inference, replicability and discourages adoption of these tools for conservation and ecosystem monitoring, where they might otherwise provide useful insight.Here we present the Acoustic Index User's Guide—an interactive RShiny web app that defines and deconstructs eight of the most commonly used acoustic indices to facilitate consistent application across the discipline. We break the acoustic indices calculations down into easy‐to‐follow steps to better enable practical application and critical interpretation of acoustic indices. We demonstrate typical soundscape patterns using a suite of 91 example audio recordings: 66 real‐world soundscapes from terrestrial, aquatic and subterranean systems around the world, and 25 synthetic files demonstrating archetypal soundscape patterns. Our interpretation figures signpost specific soundscape patterns likely to be reflected in acoustic indices' values.This RShiny app is a living resource; additional acoustic indices will be added in the future through collaboration with authors of pre‐existing and new indices. The app also serves as a best‐practice template for the information required when publishing new acoustic indices, so that authors can facilitate the widest possible understanding and uptake of their indices. In turn, improved understanding of acoustic indices will aid effective hypothesis generation, application and interpretation in ecological research, ecosystem monitoring and conservation management.
期刊介绍:
A British Ecological Society journal, Methods in Ecology and Evolution (MEE) promotes the development of new methods in ecology and evolution, and facilitates their dissemination and uptake by the research community. MEE brings together papers from previously disparate sub-disciplines to provide a single forum for tracking methodological developments in all areas.
MEE publishes methodological papers in any area of ecology and evolution, including:
-Phylogenetic analysis
-Statistical methods
-Conservation & management
-Theoretical methods
-Practical methods, including lab and field
-This list is not exhaustive, and we welcome enquiries about possible submissions. Methods are defined in the widest terms and may be analytical, practical or conceptual.
A primary aim of the journal is to maximise the uptake of techniques by the community. We recognise that a major stumbling block in the uptake and application of new methods is the accessibility of methods. For example, users may need computer code, example applications or demonstrations of methods.