IMA Genome - F19 : A genome assembly and annotation guide to empower mycologists, including annotated draft genome sequences of Ceratocystis pirilliformis, Diaporthe australafricana, Fusarium ophioides, Paecilomyces lecythidis, and Sporothrix stenoceras.

IF 5.2 1区 生物学 Q1 MYCOLOGY Ima Fungus Pub Date : 2024-06-03 DOI:10.1186/s43008-024-00142-z
Janneke Aylward, Andi M Wilson, Cobus M Visagie, Joseph Spraker, Irene Barnes, Carla Buitendag, Callin Ceriani, Lina Del Mar Angel, Deanné du Plessis, Taygen Fuchs, Katharina Gasser, Daniella Krämer, WenWen Li, Kiara Munsamy, Anja Piso, Jenna-Lee Price, Byron Sonnekus, Chanel Thomas, Ariska van der Nest, Alida van Dijk, Alishia van Heerden, Nicole van Vuuren, Neriman Yilmaz, Tuan A Duong, Nicolaas A van der Merwe, Michael J Wingfield, Brenda D Wingfield
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Abstract

The pace at which Next Generation Sequence data is being produced continues to accelerate as technology improves. As a result, such data are increasingly becoming accessible to biologists outside of the field of bioinformatics. In contrast, access to training in the methods of genome assembly and annotation are not growing at a similar rate. In this issue, we report on a Genome Assembly Workshop for Mycologists that was held at the Forestry and Agricultural Biotechnology Institute (FABI) at the University of Pretoria, South Africa and make available the 12 draft genome sequences emanating from the event. With the aim of making the process of genome assembly and annotation more accessible to biologists, we provide a step-by-step guide to both genome assembly and annotation, intended to encourage and empower mycologists to use genome data in their research.

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IMA Genome - F19 :增强真菌学家能力的基因组组装和注释指南,包括 Ceratocystis pirilliformis、Diaporthe australafricana、Fusarium ophioides、Paecilomyces lecythidis 和 Sporothrix stenoceras 的注释基因组序列草案。
随着技术的进步,下一代序列数据的产生速度也在不断加快。因此,生物信息学领域以外的生物学家越来越容易获得这些数据。相比之下,获得基因组组装和注释方法培训的机会却没有以类似的速度增长。本期我们将报道在南非比勒陀利亚大学林业与农业生物技术研究所(FABI)举办的真菌学家基因组组装研讨会的情况,并提供此次活动产生的 12 个基因组序列草案。为了让生物学家更容易理解基因组组装和注释的过程,我们提供了基因组组装和注释的分步指南,旨在鼓励和增强真菌学家在研究中使用基因组数据的能力。
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来源期刊
Ima Fungus
Ima Fungus Agricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
CiteScore
11.00
自引率
3.70%
发文量
18
审稿时长
20 weeks
期刊介绍: The flagship journal of the International Mycological Association. IMA Fungus is an international, peer-reviewed, open-access, full colour, fast-track journal. Papers on any aspect of mycology are considered, and published on-line with final pagination after proofs have been corrected; they are then effectively published under the International Code of Nomenclature for algae, fungi, and plants. The journal strongly supports good practice policies, and requires voucher specimens or cultures to be deposited in a public collection with an online database, DNA sequences in GenBank, alignments in TreeBASE, and validating information on new scientific names, including typifications, to be lodged in MycoBank. News, meeting reports, personalia, research news, correspondence, book news, and information on forthcoming international meetings are included in each issue
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