Predictive modeling of mortality in carbapenem-resistant Acinetobacter baumannii bloodstream infections using machine learning.

IF 2.5 4区 医学 Q1 MEDICINE, GENERAL & INTERNAL Journal of Investigative Medicine Pub Date : 2024-10-01 Epub Date: 2024-07-30 DOI:10.1177/10815589241258964
Murat Özdede, Pınar Zarakolu, Gökhan Metan, Özgen Köseoğlu Eser, Cemile Selimova, Canan Kızılkaya, Ferhan Elmalı, Murat Akova
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Abstract

Acinetobacter baumannii, a notable drug-resistant bacterium, often induces severe infections in healthcare settings, prompting a deeper exploration of treatment alternatives due to escalating carbapenem resistance. This study meticulously examined clinical, microbiological, and molecular aspects related to in-hospital mortality in patients with carbapenem-resistant A. baumannii (CRAB) bloodstream infections (BSIs). From 292 isolates, 153 cases were scrutinized, reidentified through matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS), and evaluated for antimicrobial susceptibility and carbapenemase genes via multiplex polymerase chain reaction (PCR). Utilizing supervised machine learning, the study constructed models to predict 14- and 30-day mortality rates, revealing the Naïve Bayes model's superior specificity (0.75) and area under the curve (0.822) for 14-day mortality, and the Random Forest model's impressive recall (0.85) for 30-day mortality. These models delineated eight and nine significant features for 14- and 30-day mortality predictions, respectively, with "septic shock" as a pivotal variable. Additional variables such as neutropenia with neutropenic days prior to sepsis, mechanical ventilator support, chronic kidney disease, and heart failure were also identified as ranking features. However, empirical antibiotic therapy appropriateness and specific microbiological data had minimal predictive efficacy. This research offers foundational data for assessing mortality risks associated with CRAB BSI and underscores the importance of stringent infection control practices in the wake of the scarcity of new effective antibiotics against resistant strains. The advanced models and insights generated in this study serve as significant resources for managing the repercussions of A. baumannii infections, contributing substantially to the clinical understanding and management of such infections in healthcare environments.

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EXPRESS:利用机器学习建立耐碳青霉烯类鲍曼不动杆菌血流感染死亡率的预测模型。
鲍曼不动杆菌(Acinetobacter baumannii)是一种显著的耐药细菌,经常在医疗机构诱发严重感染,由于碳青霉烯类耐药性的不断升级,促使人们深入探讨替代治疗方法。本研究细致研究了耐碳青霉烯类鲍曼尼菌(CRAB)血流感染(BSI)患者院内死亡率相关的临床、微生物和分子方面的问题。对 292 例分离菌株中的 153 例进行了仔细检查,通过 MALDI-TOF-MS 对其进行了重新鉴定,并通过多重 PCR 对其抗菌药敏感性和碳青霉烯酶基因进行了评估。利用监督机器学习,该研究构建了预测 14 天和 30 天死亡率的模型,结果显示奈夫贝叶斯模型对 14 天死亡率的特异性(0.75)和曲线下面积(AUC; 0.822)更优,而随机森林模型对 30 天死亡率的召回率(0.85)令人印象深刻。这些模型分别为 14 天和 30 天死亡率预测确定了 8 个和 9 个重要特征,其中 "脓毒性休克 "是一个关键变量。其他变量,如脓毒症前几天的中性粒细胞减少症、机械呼吸机支持、慢性肾病和心力衰竭也被确定为排名特征。然而,经验性抗生素治疗的适当性和特定微生物学数据的预测效果甚微。这项研究为评估与 CRAB BSI 相关的死亡风险提供了基础数据,并强调了在缺乏新的有效抗生素来对抗耐药菌株的情况下严格控制感染的重要性。本研究中产生的先进模型和见解是控制鲍曼尼氏菌感染后果的重要资源,对临床了解和管理医疗环境中的此类感染大有裨益。
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来源期刊
Journal of Investigative Medicine
Journal of Investigative Medicine 医学-医学:内科
CiteScore
4.90
自引率
0.00%
发文量
111
审稿时长
24 months
期刊介绍: Journal of Investigative Medicine (JIM) is the official publication of the American Federation for Medical Research. The journal is peer-reviewed and publishes high-quality original articles and reviews in the areas of basic, clinical, and translational medical research. JIM publishes on all topics and specialty areas that are critical to the conduct of the entire spectrum of biomedical research: from the translation of clinical observations at the bedside, to basic and animal research to clinical research and the implementation of innovative medical care.
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