Bayesian analysis of 1D 1H-NMR spectra

IF 2 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Journal of magnetic resonance Pub Date : 2024-07-01 DOI:10.1016/j.jmr.2024.107723
Flavio De Lorenzi , Tom Weinmann , Simon Bruderer , Björn Heitmann , Andreas Henrici , Simon Stingelin
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Abstract

Extracting spin system parameters from 1D high resolution 1H-NMR spectra can be an intricate task requiring sophisticate methods. With a few exceptions methods to perform such a total line shape analysis commonly rely on local optimization techniques which for increasing complexity of the underlying spin system tend to reveal local solutions. In this work we propose a full Bayesian modeling approach based on a quantum mechanical model of the spin system. The Bayesian formalism provides a global optimization strategy which allows to efficiently include prior knowledge about the spin system or to incorporate additional constraints concerning the parameters of interest. The proposed algorithm has been tested on synthetic and real 1D 1H-NMR data for various spin systems with increasing complexity. The results show that the Bayesian algorithm provides accurate estimates even for complex spectra with many overlapping regions, and that it can cope with symmetry induced local minima. By providing an unbiased estimate of the model evidence the proposed algorithm furthermore offers a way to discriminate between different spin system candidates.

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对一维 1H-NMR 光谱进行贝叶斯分析
从一维高分辨率 1H-NMR 光谱中提取自旋系统参数是一项复杂的任务,需要复杂的方法。除了少数例外情况,进行这种全线形分析的方法通常依赖于局部优化技术,而随着底层自旋系统复杂性的增加,局部优化技术往往会暴露出局部解决方案。在这项工作中,我们提出了一种基于自旋系统量子力学模型的全贝叶斯建模方法。贝叶斯形式主义提供了一种全局优化策略,可以有效地纳入有关自旋系统的先验知识,或纳入有关参数的额外约束。针对复杂度不断增加的各种自旋系统的合成和真实一维 1H-NMR 数据,对所提出的算法进行了测试。结果表明,贝叶斯算法甚至可以为具有许多重叠区域的复杂光谱提供准确的估计值,并且可以应对对称性引起的局部极小值。通过对模型证据进行无偏估计,所提出的算法还提供了一种区分不同自旋系统候选者的方法。
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来源期刊
CiteScore
3.80
自引率
13.60%
发文量
150
审稿时长
69 days
期刊介绍: The Journal of Magnetic Resonance presents original technical and scientific papers in all aspects of magnetic resonance, including nuclear magnetic resonance spectroscopy (NMR) of solids and liquids, electron spin/paramagnetic resonance (EPR), in vivo magnetic resonance imaging (MRI) and spectroscopy (MRS), nuclear quadrupole resonance (NQR) and magnetic resonance phenomena at nearly zero fields or in combination with optics. The Journal''s main aims include deepening the physical principles underlying all these spectroscopies, publishing significant theoretical and experimental results leading to spectral and spatial progress in these areas, and opening new MR-based applications in chemistry, biology and medicine. The Journal also seeks descriptions of novel apparatuses, new experimental protocols, and new procedures of data analysis and interpretation - including computational and quantum-mechanical methods - capable of advancing MR spectroscopy and imaging.
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