Physicochemical modelling of the retention mechanism of temperature-responsive polymeric columns for HPLC through machine learning algorithms

IF 7.1 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Journal of Cheminformatics Pub Date : 2024-06-21 DOI:10.1186/s13321-024-00873-6
Elena Bandini, Rodrigo Castellano Ontiveros, Ardiana Kajtazi, Hamed Eghbali, Frédéric Lynen
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Abstract

Temperature-responsive liquid chromatography (TRLC) offers a promising alternative to reversed-phase liquid chromatography (RPLC) for environmentally friendly analytical techniques by utilizing pure water as a mobile phase, eliminating the need for harmful organic solvents. TRLC columns, packed with temperature-responsive polymers coupled to silica particles, exhibit a unique retention mechanism influenced by temperature-induced polymer hydration. An investigation of the physicochemical parameters driving separation at high and low temperatures is crucial for better column manufacturing and selectivity control. Assessment of predictability using a dataset of 139 molecules analyzed at different temperatures elucidated the molecular descriptors (MDs) relevant to retention mechanisms. Linear regression, support vector regression (SVR), and tree-based ensemble models were evaluated, with no standout performer. The precision, accuracy, and robustness of models were validated through metrics, such as r and mean absolute error (MAE), and statistical analysis. At \(45\,^{\circ }\hbox {C}\), logP predominantly influenced retention, akin to reversed-phase columns, while at \(5^{\circ }\hbox {C}\), complex interactions with lipophilic and negative MDs, along with specific functional groups, dictated retention. These findings provide deeper insights into TRLC mechanisms, facilitating method development and maximizing column potential.

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通过机器学习算法建立用于高效液相色谱的温度响应型聚合物色谱柱保留机理的物理化学模型
温度响应液相色谱法(TRLC)利用纯水作为流动相,无需使用有害的有机溶剂,是反相液相色谱法(RPLC)的理想替代品,可用于环保型分析技术。TRLC 色谱柱由温度响应聚合物和二氧化硅颗粒组成,受温度引起的聚合物水合作用影响,表现出独特的保留机制。研究驱动高温和低温分离的物理化学参数对于更好地制造色谱柱和控制选择性至关重要。利用在不同温度下分析的 139 种分子的数据集对可预测性进行评估,阐明了与保留机制相关的分子描述符 (MD)。对线性回归、支持向量回归(SVR)和基于树的集合模型进行了评估,没有发现突出的表现。通过r和平均绝对误差(MAE)等指标以及统计分析,对模型的精确度、准确性和稳健性进行了验证。在 $$45\,^{\circ }\hbox {C}$ 时,logP 主要影响保留,类似于反相色谱柱,而在 $$5^{\circ }\hbox {C}$ 时,与亲脂性和负 MD 以及特定官能团的复杂相互作用决定了保留。这些发现深入揭示了 TRLC 的机理,有助于方法开发和最大限度地发挥色谱柱的潜力。
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来源期刊
Journal of Cheminformatics
Journal of Cheminformatics CHEMISTRY, MULTIDISCIPLINARY-COMPUTER SCIENCE, INFORMATION SYSTEMS
CiteScore
14.10
自引率
7.00%
发文量
82
审稿时长
3 months
期刊介绍: Journal of Cheminformatics is an open access journal publishing original peer-reviewed research in all aspects of cheminformatics and molecular modelling. Coverage includes, but is not limited to: chemical information systems, software and databases, and molecular modelling, chemical structure representations and their use in structure, substructure, and similarity searching of chemical substance and chemical reaction databases, computer and molecular graphics, computer-aided molecular design, expert systems, QSAR, and data mining techniques.
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