In distributive phosphorylation catalytic constants enable non-trivial dynamics.

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS ACS Applied Bio Materials Pub Date : 2024-06-25 DOI:10.1007/s00285-024-02114-8
Carsten Conradi, Maya Mincheva
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Abstract

Ordered distributive double phosphorylation is a recurrent motif in intracellular signaling and control. It is either sequential (where the site phosphorylated last is dephosphorylated first) or cyclic (where the site phosphorylated first is dephosphorylated first). Sequential distributive double phosphorylation has been extensively studied and an inequality involving only the catalytic constants of kinase and phosphatase is known to be sufficient for multistationarity. As multistationarity is necessary for bistability it has been argued that these constants enable bistability. Here we show for cyclic distributive double phosphorylation that if its catalytic constants satisfy an analogous inequality, then Hopf bifurcations and hence sustained oscillations can occur. Hence we argue that in distributive double phosphorylation (sequential or distributive) the catalytic constants enable non-trivial dynamics. In fact, if the rate constant values in a network of cyclic distributive double phosphorylation satisfy this inequality, then a network of sequential distributive double phosphorylation with the same rate constant values will show multistationarity-albeit for different values of the total concentrations. For cyclic distributive double phosphorylation we further describe a procedure to generate rate constant values where Hopf bifurcations and hence sustained oscillations can occur. This may, for example, allow for an efficient sampling of oscillatory regions in parameter space. Our analysis is greatly simplified by the fact that it is possible to reduce the network of cyclic distributive double phosphorylation to what we call a network with a single extreme ray. We summarize key properties of these networks.

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在分布式磷酸化过程中,催化常数可实现非三维动态变化。
有序分布的双重磷酸化是细胞内信号传递和控制中经常出现的一种模式。它可以是顺序性的(最后被磷酸化的位点先被去磷酸化),也可以是循环性的(先被磷酸化的位点先被去磷酸化)。人们已经对顺序分布式双重磷酸化进行了广泛的研究,已知仅涉及激酶和磷酸酶催化常数的不等式就足以实现多稳态性。由于多稳态性是双稳态性的必要条件,因此有人认为这些常量使双稳态性成为可能。在此,我们对循环分布式双重磷酸化进行了证明,如果其催化常数满足类似的不等式,那么就会出现霍普夫分岔,从而产生持续振荡。因此,我们认为,在分布式双重磷酸化(连续或分布式)中,催化常数可以实现非三向动力学。事实上,如果循环分布式双重磷酸化网络中的速率常数值满足这一不等式,那么具有相同速率常数值的顺序分布式双重磷酸化网络将显示多稳态性--尽管总浓度的值不同。对于循环分布式双重磷酸化,我们进一步描述了产生霍普夫分岔的速率常数值的程序,从而可以产生持续振荡。例如,这可以对参数空间中的振荡区域进行有效采样。由于可以将循环分布式双重磷酸化网络简化为我们所说的具有单一极端射线的网络,因此我们的分析大大简化了。我们总结了这些网络的主要特性。
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来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
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