Comparative physiological, biochemical and transcriptomic analyses to reveal potential regulatory mechanisms in response to starvation stress in Cipangopaludina chinensis

IF 2.2 2区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Comparative Biochemistry and Physiology D-Genomics & Proteomics Pub Date : 2024-06-24 DOI:10.1016/j.cbd.2024.101279
Chang Yuan , Kangqi Zhou , Xianhui Pan, Dapeng Wang, Caiqun Zhang, Yong Lin, Zhong Chen, Junqi Qin, Xuesong Du, Yin Huang
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Abstract

Cipangopaludina chinensis, as a financially significant species in China, represents a gastropod in nature which frequently encounters starvation stress owing to its limited prey options. However, the underlying response mechanisms to combat starvation have not been investigated in depth. We collected C. chinensis under several times of starvation stress (0, 7, 30, and 60 days) for nutrient, biochemical characteristics and transcriptome analyses. The results showed that prolonged starvation stress (> 30 days) caused obvious fluctuations in the nutrient composition of snails, with dramatic reductions in body weight, survival and digestive enzyme activity (amylase, protease, and lipase), and markedly enhanced the antioxidant enzyme activities of the snails. Comparative transcriptome analyses revealed 3538 differentially expressed genes (DEGs), which were significantly associated with specific starvation stress-responsive pathways, including oxidative phosphorylation and alanine, aspartate, and glutamate metabolism. Then, we identified 40 candidate genes (e.g., HACD2, Cp1, CYP1A2, and GPX1) response to starvation stress through STEM and WGCNA analyses. RT-qPCR verified the accuracy and reliability of the high-throughput sequencing results. This study provides insights into snail overwintering survival and the potential regulatory mechanisms of snail adaptation to starvation stress.

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比较生理、生化和转录组分析,揭示 Cipangopaludina chinensis 应对饥饿胁迫的潜在调控机制。
作为中国具有重要经济价值的物种,腹足类动物在自然界中经常遇到饥饿胁迫,原因是其可选择的猎物有限。然而,人们尚未深入研究其对抗饥饿的潜在反应机制。我们采集了不同饥饿胁迫时间(0、7、30和60天)下的螯虾,对其进行了营养、生化特征和转录组分析。结果表明,长期饥饿胁迫(大于30天)导致蜗牛营养成分明显波动,体重、存活率和消化酶(淀粉酶、蛋白酶和脂肪酶)活性急剧下降,但蜗牛的抗氧化酶活性明显增强。转录组比较分析发现了3538个差异表达基因(DEGs),这些基因与特定的饥饿胁迫反应途径显著相关,包括氧化磷酸化和丙氨酸、天门冬氨酸和谷氨酸代谢。然后,我们通过 STEM 和 WGCNA 分析确定了 40 个饥饿胁迫响应候选基因(如 HACD2、Cp1、CYP1A2 和 GPX1)。RT-qPCR 验证了高通量测序结果的准确性和可靠性。这项研究有助于深入了解蜗牛的越冬存活率以及蜗牛适应饥饿胁迫的潜在调控机制。
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来源期刊
CiteScore
5.10
自引率
3.30%
发文量
69
审稿时长
33 days
期刊介绍: Comparative Biochemistry & Physiology (CBP) publishes papers in comparative, environmental and evolutionary physiology. Part D: Genomics and Proteomics (CBPD), focuses on “omics” approaches to physiology, including comparative and functional genomics, metagenomics, transcriptomics, proteomics, metabolomics, and lipidomics. Most studies employ “omics” and/or system biology to test specific hypotheses about molecular and biochemical mechanisms underlying physiological responses to the environment. We encourage papers that address fundamental questions in comparative physiology and biochemistry rather than studies with a focus that is purely technical, methodological or descriptive in nature.
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