{"title":"Improved kernelization and fixed-parameter algorithms for bicluster editing","authors":"Manuel Lafond","doi":"10.1007/s10878-024-01186-y","DOIUrl":null,"url":null,"abstract":"<p>Given a bipartite graph <i>G</i>, the <span>Bicluster Editing</span> problem asks for the minimum number of edges to insert or delete in <i>G</i> so that every connected component is a bicluster, i.e. a complete bipartite graph. This has several applications, including in bioinformatics and social network analysis. In this work, we study the parameterized complexity under the natural parameter <i>k</i>, which is the number of allowed modified edges. We first show that one can obtain a kernel with 4.5<i>k</i> vertices, an improvement over the previously known quadratic kernel. We then propose an algorithm that runs in time <span>\\(O^*(2.581^k)\\)</span>. Our algorithm has the advantage of being conceptually simple and should be easy to implement.</p>","PeriodicalId":50231,"journal":{"name":"Journal of Combinatorial Optimization","volume":"3 1","pages":""},"PeriodicalIF":0.9000,"publicationDate":"2024-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Combinatorial Optimization","FirstCategoryId":"100","ListUrlMain":"https://doi.org/10.1007/s10878-024-01186-y","RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
Abstract
Given a bipartite graph G, the Bicluster Editing problem asks for the minimum number of edges to insert or delete in G so that every connected component is a bicluster, i.e. a complete bipartite graph. This has several applications, including in bioinformatics and social network analysis. In this work, we study the parameterized complexity under the natural parameter k, which is the number of allowed modified edges. We first show that one can obtain a kernel with 4.5k vertices, an improvement over the previously known quadratic kernel. We then propose an algorithm that runs in time \(O^*(2.581^k)\). Our algorithm has the advantage of being conceptually simple and should be easy to implement.
期刊介绍:
The objective of Journal of Combinatorial Optimization is to advance and promote the theory and applications of combinatorial optimization, which is an area of research at the intersection of applied mathematics, computer science, and operations research and which overlaps with many other areas such as computation complexity, computational biology, VLSI design, communication networks, and management science. It includes complexity analysis and algorithm design for combinatorial optimization problems, numerical experiments and problem discovery with applications in science and engineering.
The Journal of Combinatorial Optimization publishes refereed papers dealing with all theoretical, computational and applied aspects of combinatorial optimization. It also publishes reviews of appropriate books and special issues of journals.