Phylogenetic relationships and divergence time of Hydrangea sect. Macrophyllae (Hydrangeaceae) revealed by genome-wide SNPs

IF 1.5 3区 生物学 Q4 EVOLUTIONARY BIOLOGY Plant Systematics and Evolution Pub Date : 2024-07-04 DOI:10.1007/s00606-024-01902-5
Shoki Murakami, Takuro Ito, Tatsuya Uemachi, Shinji Fujii, Ayumi Matsuo, Yoshihisa Suyama, Masayuki Maki
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Abstract

Hydrangea sect. Macrophyllae comprises deciduous shrubs including two species with seven infraspecific taxa distributed throughout the Japanese Archipelago and adjacent areas. In this study, we revealed a phylogeny of Hydrangea sect. Macrophyllae by using a larger dataset of genome-wide SNPs than those employed in a previous study and by adding more comprehensive taxa/populations, which cover the entire distribution of the section. We then revised the taxonomic treatment of sect. Macrophyllae based on the higher-resolution phylogenetic trees obtained in this study. The phylogenetic trees estimated in this study showed five major clades, suggesting that H. serrata var. minamitanii and var. yesoensis should be treated as independent species from other H. serrata, that H. serrata var. australis and var. yakushimensis could be subclassified under the major clades and that var. angustata could be a synonym of var. serrata. The divergence time of these major clades was estimated to be in the Pleistocene.

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通过全基因组 SNPs 揭示绣球花科(Hydrangea sect.全基因组 SNPs 揭示了绣球花科(Macrophyllae)的系统发育关系和分化时间
绣球花科绣球花科(Macrophyllae)由落叶灌木组成,包括两个种和七个种下类群,分布于日本列岛和邻近地区。在本研究中,我们利用更大的基因数据集,揭示了绣球花科的系统发育。在本研究中,我们使用了比之前的研究更大的全基因组 SNP 数据集,并增加了更全面的分类群/种群,涵盖了绣球花科的整个分布区,从而揭示了绣球花科的系统发育。然后,我们根据较高的分类学水平修订了大叶藻科的分类学处理。然后,我们根据本研究获得的更高分辨率的系统发生树,修订了大戟科的分类处理。本研究估计的系统发生树显示了五个主要支系,表明 H. serrata var. minamitanii 和 var.据估计,这些主要支系的分化时间在更新世。
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来源期刊
Plant Systematics and Evolution
Plant Systematics and Evolution 生物-进化生物学
CiteScore
3.60
自引率
15.80%
发文量
37
审稿时长
1 months
期刊介绍: Plant Systematics and Evolution is an international journal dedicated to publication of peer-reviewed original papers and reviews on plant systematics in the broadest sense. The journal aims to bridge the specific subject areas in plant systematics and evolution, encompassing evolutionary, phylogenetic, genomic and biogeographical studies at the population and higher taxonomic levels. Taxonomic emphasis is on all land plant groups in a wide sense, including fungi and lichens.
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