Development of a Meshless Kernel-Based Scheme for Particle-Field Brownian Dynamics Simulations

IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry B Pub Date : 2024-07-10 DOI:10.1021/acs.jpcb.4c01441
Aristotelis P. Sgouros*,  and , Doros N. Theodorou, 
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Abstract

We develop a meshless discretization scheme for particle-field Brownian dynamics simulations. The density is assigned on the particle level using a weighting kernel with finite support. The system’s free energy density is derived from an equation of state (EoS) and includes a square gradient term. The numerical stability of the scheme is evaluated in terms of reproducing the thermodynamics (equilibrium density and compressibility) and dynamics (diffusion coefficient) of homogeneous samples. Using a reduced description to simplify our analysis, we find that numerical stability depends strictly on reduced reference compressibility, kernel range, time step in relation to the friction factor, and reduced external pressure, the latter being relevant under isobaric conditions. Appropriate parametrization yields precise thermodynamics, further improved through a simple renormalization protocol. The dynamics can be restored exactly through a trivial manipulation of the time step and friction coefficient. A semiempirical formula for the upper bound on the time step is derived, which takes into account variations in compressibility, friction factor, and kernel range. We test the scheme on realistic mesoscopic models of fluids, involving both simple (Helfand) and more sophisticated (Sanchez–Lacombe) equations of state.

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为粒子场布朗动力学模拟开发基于无网格核的方案
我们为粒子场布朗动力学模拟开发了一种无网格离散方案。使用有限支持的加权核在粒子水平上分配密度。系统的自由能密度由状态方程(EoS)导出,并包含一个平方梯度项。通过再现均质样品的热力学(平衡密度和可压缩性)和动力学(扩散系数),对该方案的数值稳定性进行了评估。通过简化分析的简化描述,我们发现数值稳定性严格取决于减小的参考可压缩性、核范围、与摩擦因数相关的时间步长以及减小的外部压力,后者与等压条件相关。适当的参数化产生了精确的热力学,并通过简单的重正化协议得到进一步改进。通过对时间步长和摩擦系数的微小操作,可以精确地恢复动力学。推导出了时间步长上限的半经验公式,其中考虑到了可压缩性、摩擦系数和内核范围的变化。我们在现实的介观流体模型上测试了这一方案,涉及简单的(赫尔范德)和更复杂的(桑切斯-拉孔贝)状态方程。
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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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