Small Non-Coding sRNA53 Modulates the Quorum Sensing System to Enhance Drug Resistance in Escherichia coli Exposed to Heavy Ion and X-ray Irradiation

IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Molecular Biology Pub Date : 2024-07-09 DOI:10.1134/s0026893324700420
S. J. Zhao, X. Y. Pang, Q. W. Zhao, X. Li
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Abstract

Small non-coding RNAs (sRNAs, also called sncRNAs) known as gene expression regulatory factors are capable of modulating mRNA functions through complementary base pairing. A number of studies has shown that when exposed to radiation, the expression of drug resistance genes increases in some cells. Here, in Escherichia coli subjected to 12C6+ heavy ion beams or X-ray exposure, five sRNAs (sRNA120, sRNA127, sRNA109, sRNA72, sRNA53) with elevated expression were identified by deep sequencing and sRNAscanner prediction. To investigate whether they have a potential role in drug resistance, we engineered strains overexpressing these sRNAs, and assessed their survival rate under sub-lethal antibiotic concentrations. It was noteworthy that under Gentamicin, Norfloxacin, Chloramphenicol and Cfotaxime, the survival rate of ::sRNA53 strain was 1.0667, 1.0251, 1.3797 and 3.9327 times higher, respectively, than for the control and strains overexpressing other sncRNAs. TargetRNA2 software identified lsrA as a likely target gene regulated by sRNA53 based on binding free energy calculations. We analyzed the interaction sites between sRNA53 and lsrA and measured the expression of these molecules in various mutants using RT-qPCR. We also investigated the regulation of Luxs/AI-2 system by the lsr operon and the biofilm formation of mutants. In the ::sRNA53 strain, the log2FC for sRNA53 and lsrA concurrently escalated by 1.8533 and 1.7367-fold. Additionally, the biofilm formation ability of ::sRNA53, ::lsrA, and ::sRNA53::lsrA (co-expression) strains was increased 5.4542, 3.946, and 7.1758-fold, respectively, compared to wild-type MG1655. Based on these data, we can conclude that sRNA53 plays a critical role in the development of antibiotic resistance in E. coli. Apparently, the action of sRNA53 targets the lsrA gene, which, by modulating the Luxs/AI-2 system, affects the ability to biofilm formation and drug resistance of the bacterium. The study shows that a new sRNA, named sRNA53, is involved in the formation of tolerance to sub-lethal doses of various antibiotics.

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小型非编码 sRNA53 调节法定量感知系统,增强大肠杆菌在重离子和 X 射线辐照下的抗药性
摘要被称为基因表达调控因子的小型非编码 RNA(sRNA,又称 sncRNA)能够通过碱基互补配对调节 mRNA 的功能。大量研究表明,当受到辐射时,一些细胞中耐药基因的表达会增加。这里,通过深度测序和 sRNAscanner 预测,我们发现在受到 12C6+ 重离子束或 X 射线照射的大肠杆菌中,有五种 sRNA(sRNA120、sRNA127、sRNA109、sRNA72 和 sRNA53)的表达量升高。为了研究它们是否在耐药性中起潜在作用,我们设计了过表达这些 sRNA 的菌株,并评估了它们在亚致死抗生素浓度下的存活率。值得注意的是,在庆大霉素、诺氟沙星、氯霉素和氟他肟的作用下,::sRNA53菌株的存活率分别是对照和过表达其他sncRNAs菌株的1.0667倍、1.0251倍、1.3797倍和3.9327倍。根据结合自由能计算,TargetRNA2 软件确定 lsrA 可能是受 sRNA53 调控的靶基因。我们分析了 sRNA53 与 lsrA 之间的相互作用位点,并使用 RT-qPCR 测定了这些分子在不同突变体中的表达量。我们还研究了 lsr 操作子对 Luxs/AI-2 系统的调控以及突变体生物膜的形成。在::sRNA53菌株中,sRNA53和lsrA的log2FC同时上升了1.8533倍和1.7367倍。此外,与野生型 MG1655 相比,::sRNA53、::lsrA 和::sRNA53::lsrA(共表达)菌株的生物膜形成能力分别提高了 5.4542、3.946 和 7.1758 倍。根据这些数据,我们可以得出结论:sRNA53 在大肠杆菌产生抗生素耐药性的过程中起着至关重要的作用。显然,sRNA53 的作用靶标是 lsrA 基因,该基因通过调节 Luxs/AI-2 系统,影响了大肠杆菌的生物膜形成能力和耐药性。这项研究表明,一种名为 sRNA53 的新 sRNA 参与了对亚致死剂量各种抗生素耐受性的形成。
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来源期刊
Molecular Biology
Molecular Biology 生物-生化与分子生物学
CiteScore
1.30
自引率
8.30%
发文量
78
审稿时长
3 months
期刊介绍: Molecular Biology is an international peer reviewed journal that covers a wide scope of problems in molecular, cell and computational biology including genomics, proteomics, bioinformatics, molecular virology and immunology, molecular development biology, molecular evolution and related areals. Molecular Biology publishes reviews, experimental and theoretical works. Every year, the journal publishes special issues devoted to most rapidly developing branches of physical-chemical biology and to the most outstanding scientists.
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