BOOST: a robust ten-fold expansion method on hour-scale

bioRxiv Pub Date : 2024-07-16 DOI:10.1101/2024.07.11.603043
Jinyu Guo, Hui Yang, Chixiang Lu, Di Cui, Murong Zhao, Cun Li, Weihua Chen, Qian Yang, Zhijie Li, Mingkun Chen, Shanchao Zhao, Jie Zhou, Jiaye He, Haibo Jiang
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Abstract

Expansion microscopy (ExM) enhances the microscopy resolution by physically expanding biological specimens and improves the visualization of structural and molecular details. Numerous ExM techniques and labeling methods have been developed and refined over the past decade to cater to specific research needs. Nonetheless, a shared limitation among current protocols is the extensive time required for sample processing, particularly for challenging-to-expand biological specimens (e.g., formalin-fixed paraffin-embedded (FFPE) sections and large three-dimensional specimens). Here, we have developed a rapid and robust ExM workflow named BOOST, which leverages a series of novel microwave (MW)-accelerated ExM chemistry, resulting in a single-step linear expansion of ∼10×. Specifically, BOOST facilitates a ∼10-fold expansion of cultured cells, tissue sections, and even the challenging-to-expand FFPE sections under merely 90 minutes with heat and surfactant-based protein denaturation. Furthermore, BOOST employs microwave-assisted proteomic staining and immunostaining to facilitate high-resolution visualization of structural and molecular details with significantly enhanced throughput. Noteworthily, BOOST has pioneered a ∼10-fold expansion of large millimeter-sized three-dimensional specimens in approximately three hours. BOOST offers an easily adaptable workflow based on stable and common reagents, thus boosting the potential adoption of ExM methods in biological investigations.
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BOOST:小时尺度上的稳健十倍扩展法
膨胀显微镜(ExM)通过物理膨胀生物样本来提高显微镜分辨率,并改善结构和分子细节的可视化。在过去的十年中,为了满足特定的研究需求,人们开发并改进了许多 ExM 技术和标记方法。然而,目前的方案都有一个共同的局限性,那就是样本处理需要大量时间,特别是对于难以展开的生物样本(如福尔马林固定石蜡包埋(FFPE)切片和大型三维样本)。在此,我们开发了一种名为 BOOST 的快速、稳健的 ExM 工作流程,它利用一系列新型微波(MW)加速 ExM 化学反应,使单步线性扩增达到 ∼ 10 倍。具体来说,BOOST 能在短短 90 分钟内,通过加热和基于表面活性剂的蛋白质变性,使培养细胞、组织切片,甚至具有挑战性的 FFPE 切片膨胀 10 倍。此外,BOOST 还采用了微波辅助蛋白质组染色和免疫染色技术,有助于高分辨率地观察结构和分子细节,大大提高了通量。值得注意的是,BOOST 率先在大约三小时内将毫米大小的大型三维标本扩大了 10 倍。BOOST 基于稳定的通用试剂,提供了一个易于调整的工作流程,从而提高了 ExM 方法在生物研究中的应用潜力。
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