Yuting Peng, Yan Dai, Shu Zhang, Jie Deng, Xun Jia
{"title":"Joint k-ω Space Image Reconstruction and Data Fitting for Chemical Exchange Saturation Transfer Magnetic Resonance Imaging","authors":"Yuting Peng, Yan Dai, Shu Zhang, Jie Deng, Xun Jia","doi":"10.3390/tomography10070085","DOIUrl":null,"url":null,"abstract":"Chemical exchange saturation transfer (CEST) magnetic resonance imaging (MRI) is a novel MRI technology to image certain compounds at extremely low concentrations. Long acquisition time to measure signals at a set of offset frequencies of the Z-spectra and to repeat measurements to reduce noise pose significant challenges to its applications. This study explores correlations of CEST MR images along the spatial and Z-spectral dimensions to improve MR image quality and robustness of magnetization transfer ratio (MTR) asymmetry estimation via a joint k-ω reconstruction model. The model was formulated as an optimization problem with respect to MR images at all frequencies ω, while incorporating regularizations along the spatial and spectral dimensions. The solution was subject to a self-consistency condition that the Z-spectrum of each pixel follows a multi-peak data fitting model corresponding to different CEST pools. The optimization problem was solved using the alternating direction method of multipliers. The proposed joint reconstruction method was evaluated on a simulated CEST MRI phantom and semi-experimentally on choline and iopamidol phantoms with added Gaussian noise of various levels. Results demonstrated that the joint reconstruction method was more tolerable to noise and reduction in number of offset frequencies by improving signal-to-noise ratio (SNR) of the reconstructed images and reducing uncertainty in MTR asymmetry estimation. In the choline and iopamidol phantom cases with 10.5% noise in the measurement data, our method achieved an averaged SNR of 31.0 dB and 32.2 dB compared to the SNR of 24.7 dB and 24.4 dB in the conventional reconstruction approach. It reduced uncertainty of the MTR asymmetry estimation over all regions of interest by 54.4% and 43.7%, from 1.71 and 2.38 to 0.78 and 1.71, respectively.","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":"10 1","pages":""},"PeriodicalIF":4.7000,"publicationDate":"2024-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.3390/tomography10070085","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
引用次数: 0
Abstract
Chemical exchange saturation transfer (CEST) magnetic resonance imaging (MRI) is a novel MRI technology to image certain compounds at extremely low concentrations. Long acquisition time to measure signals at a set of offset frequencies of the Z-spectra and to repeat measurements to reduce noise pose significant challenges to its applications. This study explores correlations of CEST MR images along the spatial and Z-spectral dimensions to improve MR image quality and robustness of magnetization transfer ratio (MTR) asymmetry estimation via a joint k-ω reconstruction model. The model was formulated as an optimization problem with respect to MR images at all frequencies ω, while incorporating regularizations along the spatial and spectral dimensions. The solution was subject to a self-consistency condition that the Z-spectrum of each pixel follows a multi-peak data fitting model corresponding to different CEST pools. The optimization problem was solved using the alternating direction method of multipliers. The proposed joint reconstruction method was evaluated on a simulated CEST MRI phantom and semi-experimentally on choline and iopamidol phantoms with added Gaussian noise of various levels. Results demonstrated that the joint reconstruction method was more tolerable to noise and reduction in number of offset frequencies by improving signal-to-noise ratio (SNR) of the reconstructed images and reducing uncertainty in MTR asymmetry estimation. In the choline and iopamidol phantom cases with 10.5% noise in the measurement data, our method achieved an averaged SNR of 31.0 dB and 32.2 dB compared to the SNR of 24.7 dB and 24.4 dB in the conventional reconstruction approach. It reduced uncertainty of the MTR asymmetry estimation over all regions of interest by 54.4% and 43.7%, from 1.71 and 2.38 to 0.78 and 1.71, respectively.
化学交换饱和转移(CEST)磁共振成像(MRI)是一种新型磁共振成像技术,可对浓度极低的某些化合物进行成像。在一组偏移频率的 Z 光谱上测量信号和重复测量以降低噪声所需的采集时间较长,这给其应用带来了巨大挑战。本研究探讨了 CEST 磁共振图像在空间和 Z 光谱维度上的相关性,以通过联合 k-ω 重建模型提高磁共振图像质量和磁化传递比(MTR)不对称估计的稳健性。该模型被表述为一个与所有频率ω的磁共振图像相关的优化问题,同时包含了空间和频谱维度的正则化。求解时需要满足一个自洽条件,即每个像素的 Z 频谱都遵循与不同 CEST 池相对应的多峰数据拟合模型。优化问题使用乘数交替法求解。在模拟 CEST 磁共振成像模型上对所提出的联合重建方法进行了评估,并在添加了不同程度高斯噪声的胆碱和碘帕米多模型上进行了半实验性评估。结果表明,通过提高重建图像的信噪比(SNR)和降低 MTR 不对称估计的不确定性,联合重建方法对噪声和偏移频率数量的减少更有耐受性。在胆碱和碘帕米多模型中,测量数据的噪声为 10.5%,与传统重建方法的信噪比 24.7 dB 和 24.4 dB 相比,我们的方法实现了 31.0 dB 和 32.2 dB 的平均信噪比。它将所有相关区域的 MTR 不对称估计的不确定性分别从 1.71 和 2.38 降至 0.78 和 1.71,降幅分别为 54.4% 和 43.7%。
期刊介绍:
ACS Applied Bio Materials is an interdisciplinary journal publishing original research covering all aspects of biomaterials and biointerfaces including and beyond the traditional biosensing, biomedical and therapeutic applications.
The journal is devoted to reports of new and original experimental and theoretical research of an applied nature that integrates knowledge in the areas of materials, engineering, physics, bioscience, and chemistry into important bio applications. The journal is specifically interested in work that addresses the relationship between structure and function and assesses the stability and degradation of materials under relevant environmental and biological conditions.