Evolution of complexity and the origins of biochemical life

Praful Gagrani
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Abstract

While modern physics and biology satisfactorily explain the passage from the Big Bang to the formation of Earth and the first cells to present-day life, respectively, the origins of biochemical life still remain an open question. Since life, as we know it, requires extremely long genetic polymers, any answer to the question must explain how an evolving system of polymers of ever-increasing length could come about on a planet that otherwise consisted only of small molecular building blocks. In this work, we show that, under realistic constraints, an abstract polymer model can exhibit dynamics such that attractors in the polymer population space with a higher average polymer length are also more probable. We generalize from the model and formalize the notions of complexity and evolution for chemical reaction networks with multiple attractors. The complexity of a species is defined as the minimum number of reactions needed to produce it from a set of building blocks, which in turn is used to define a measure of complexity for an attractor. A transition between attractors is considered to be a progressive evolution if the attractor with the higher probability also has a higher complexity. In an environment where only monomers are readily available, the attractor with a higher average polymer length is more complex. Thus, our abstract polymer model can exhibit progressive evolution for a range of thermodynamically plausible rate constants. We also formalize criteria for open-ended and historically-contingent evolution and explain the role of autocatalysis in obtaining them. Our work provides a basis for searching for prebiotically plausible scenarios in which long polymers can emerge and yield populations with even longer polymers.
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复杂性的演变与生化生命的起源
尽管现代物理学和生物学分别圆满地解释了从宇宙大爆炸到地球形成的过程,以及从第一批细胞到当今生命的过程,但生化生命的起源仍然是一个悬而未决的问题。由于我们所知的生命需要极长的遗传聚合物,因此对这个问题的任何回答都必须解释,在一个原本只有小分子构件的星球上,如何会出现一个长度不断增加的聚合物进化系统。在这项研究中,我们证明了在现实的限制条件下,抽象聚合物模型可以表现出这样的动力学特征:在聚合物种群空间中,平均聚合物长度越长的引物也就越有可能出现。我们从该模型出发,将复杂性和演化的概念形式化为具有多个引物的化学反应网络。一个物种的复杂性被定义为从一组构件中生成该物种所需的最少反应次数,这反过来又被用来定义吸引子的复杂性度量。如果概率较高的吸引子也具有较高的复杂性,那么吸引子之间的过渡就被认为是一种渐进进化。在单体容易获得的环境中,平均聚合物长度越长的吸引子就越复杂。因此,我们的抽象聚合物模型可以在一系列热力学上可信的速率常数下表现出渐进的演化过程。我们还正式确定了开放式进化和历史条件进化的标准,并解释了自催化作用在实现这些标准中的作用。我们的工作为寻找生前可信的情景提供了基础,在这种情景中,长聚合物会出现,并产生具有更长聚合物的种群。
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