Frontiers | The taxonomic and chronological composition of a museum collection of Coleoptera revealed through large-scale digitisation

IF 2.4 3区 环境科学与生态学 Q2 ECOLOGY Frontiers in Ecology and Evolution Pub Date : 2024-05-28 DOI:10.3389/fevo.2024.1305931
Beulah Garner, Louise Allan, Robyn Crowther, Lizzy Devenish, Phaedra Kokkini, Laurence Livermore, Nicola Lowndes, Krisztina Lohonya, Ben Price, Peter Wing, Alfried P. Vogler
{"title":"Frontiers | The taxonomic and chronological composition of a museum collection of Coleoptera revealed through large-scale digitisation","authors":"Beulah Garner, Louise Allan, Robyn Crowther, Lizzy Devenish, Phaedra Kokkini, Laurence Livermore, Nicola Lowndes, Krisztina Lohonya, Ben Price, Peter Wing, Alfried P. Vogler","doi":"10.3389/fevo.2024.1305931","DOIUrl":null,"url":null,"abstract":"IntroductionHistoric museum collections hold a wealth of biodiversity data that are essential to our understanding of the rapidly changing natural world. Novel curatorial practices are needed to extract and digitise these data, especially for the innumerable pinned insects whose collecting information is held on small labels.MethodsWe piloted semi-automated specimen imaging and digitisation of specimen labels for a collection of ~29,000 pinned insects of ground beetles (Carabidae: Lebiinae) held at the Natural History Museum, London. Raw transcription data were curated against literature sources and non-digital collection records. The primary data were subjected to statistical analyses to infer trends in collection activities and descriptive taxonomy over the past two centuries.ResultsThis work produced research-ready digitised records for 2,546 species (40% of known species of Lebiinae). Label information was available on geography in 91% of identified specimens, and the time of collection in 39.8% of specimens and could be approximated for nearly all specimens. Label data revealed the great age of this collection (average age 91.4 years) and the peak period of specimen acquisition between 1880 and 1930, with little differences among continents. Specimen acquisition declined greatly after about 1950. Early detected species generally were present in numerous specimens but were missing records from recent decades, while more recently acquired species (after 1950) were represented mostly by singleton specimens only. The slowing collection growth was mirrored by the decreasing rate of species description, which was affected by huge time lags of several decades to formal description after the initial specimen acquisition.DiscussionHistoric label information provides a unique resource for assessing the state of biodiversity backwards to pre-industrial times. Many species held in historical collections especially from tropical super-diverse areas may not be discovered ever again, and if they do, their recognition requires access to digital resources and more complete levels of species description. A final challenge is to link the historical specimens to contemporary collections that are mostly conducted with mechanical trapping of specimens and DNA-based species recognition.","PeriodicalId":12367,"journal":{"name":"Frontiers in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":2.4000,"publicationDate":"2024-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in Ecology and Evolution","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.3389/fevo.2024.1305931","RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ECOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

IntroductionHistoric museum collections hold a wealth of biodiversity data that are essential to our understanding of the rapidly changing natural world. Novel curatorial practices are needed to extract and digitise these data, especially for the innumerable pinned insects whose collecting information is held on small labels.MethodsWe piloted semi-automated specimen imaging and digitisation of specimen labels for a collection of ~29,000 pinned insects of ground beetles (Carabidae: Lebiinae) held at the Natural History Museum, London. Raw transcription data were curated against literature sources and non-digital collection records. The primary data were subjected to statistical analyses to infer trends in collection activities and descriptive taxonomy over the past two centuries.ResultsThis work produced research-ready digitised records for 2,546 species (40% of known species of Lebiinae). Label information was available on geography in 91% of identified specimens, and the time of collection in 39.8% of specimens and could be approximated for nearly all specimens. Label data revealed the great age of this collection (average age 91.4 years) and the peak period of specimen acquisition between 1880 and 1930, with little differences among continents. Specimen acquisition declined greatly after about 1950. Early detected species generally were present in numerous specimens but were missing records from recent decades, while more recently acquired species (after 1950) were represented mostly by singleton specimens only. The slowing collection growth was mirrored by the decreasing rate of species description, which was affected by huge time lags of several decades to formal description after the initial specimen acquisition.DiscussionHistoric label information provides a unique resource for assessing the state of biodiversity backwards to pre-industrial times. Many species held in historical collections especially from tropical super-diverse areas may not be discovered ever again, and if they do, their recognition requires access to digital resources and more complete levels of species description. A final challenge is to link the historical specimens to contemporary collections that are mostly conducted with mechanical trapping of specimens and DNA-based species recognition.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
前沿 | 通过大规模数字化揭示鞘翅目昆虫博物馆藏品的分类和年代构成
导言历史博物馆藏品拥有丰富的生物多样性数据,这些数据对于我们了解瞬息万变的自然世界至关重要。我们对伦敦自然历史博物馆收藏的约 29,000 种地甲虫(Carabidae: Lebiinae)标本标签进行了试验性的半自动化标本成像和标本标签数字化。原始转录数据根据文献资料和非数字收藏记录进行了整理。对原始数据进行了统计分析,以推断过去两个世纪中收集活动和描述性分类的趋势。结果这项工作为 2546 个物种(占已知甲虫物种的 40%)生成了可供研究的数字化记录。91%的鉴定标本有地理标签信息,39.8%的标本有采集时间,几乎所有标本的采集时间都可以近似估算。标签数据显示,这些标本收藏年代久远(平均年龄 91.4 岁),标本采集的高峰期在 1880 年至 1930 年之间,各大洲之间的差异很小。约 1950 年后,标本采集量大幅下降。早期发现的物种一般都有大量标本,但缺少近几十年的记录,而近期(1950 年以后)发现的物种大多只有单个标本。采集量增长放缓的同时,物种描述的速度也在下降,这是因为在最初采集标本后,正式描述的时间间隔长达数十年。历史收藏中的许多物种,尤其是来自热带超级多样化地区的物种,可能再也不会被发现,即使被发现,其识别也需要数字资源和更完整的物种描述。最后一个挑战是如何将历史标本与当代收藏联系起来,当代收藏大多采用机械诱捕标本和基于 DNA 的物种识别方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Frontiers in Ecology and Evolution
Frontiers in Ecology and Evolution Environmental Science-Ecology
CiteScore
4.00
自引率
6.70%
发文量
1143
审稿时长
12 weeks
期刊介绍: Frontiers in Ecology and Evolution publishes rigorously peer-reviewed research across fundamental and applied sciences, to provide ecological and evolutionary insights into our natural and anthropogenic world, and how it should best be managed. Field Chief Editor Mark A. Elgar at the University of Melbourne is supported by an outstanding Editorial Board of international researchers. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics and the public worldwide. Eminent biologist and theist Theodosius Dobzhansky’s astute observation that “Nothing in biology makes sense except in the light of evolution” has arguably even broader relevance now than when it was first penned in The American Biology Teacher in 1973. One could similarly argue that not much in evolution makes sense without recourse to ecological concepts: understanding diversity — from microbial adaptations to species assemblages — requires insights from both ecological and evolutionary disciplines. Nowadays, technological developments from other fields allow us to address unprecedented ecological and evolutionary questions of astonishing detail, impressive breadth and compelling inference. The specialty sections of Frontiers in Ecology and Evolution will publish, under a single platform, contemporary, rigorous research, reviews, opinions, and commentaries that cover the spectrum of ecological and evolutionary inquiry, both fundamental and applied. Articles are peer-reviewed according to the Frontiers review guidelines, which evaluate manuscripts on objective editorial criteria. Through this unique, Frontiers platform for open-access publishing and research networking, Frontiers in Ecology and Evolution aims to provide colleagues and the broader community with ecological and evolutionary insights into our natural and anthropogenic world, and how it might best be managed.
期刊最新文献
Assessment of mangrove structures and biomass on islands along the Java Sea: a case study on Bawean Islands and Karimunjawa Islands Amphibian diversity across an urban gradient in southern South America Seasonal somatic reserves of a northern ungulate influenced by reproduction and a fire-mediated landscape Assessment of microphytobenthos communities in the Kinzig catchment using photosynthesis-related traits, digital light microscopy and 18S-V9 amplicon sequencing Comprehensive survey of Early to Middle Triassic Gondwanan floras reveals under-representation of plant–arthropod interactions
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1