Whole proteome analysis of germinating and outgrowing Bacillus subtilis 168

IF 3.4 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Proteomics Pub Date : 2024-07-23 DOI:10.1002/pmic.202400031
Jiří Pospíšil, Alice Sax, Martin Hubálek, Libor Krásný, Jiří Vohradský
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Abstract

In this study, we present a high-resolution dataset and bioinformatic analysis of the proteome of Bacillus subtilis 168 trp+ (BSB1) during germination and spore outgrowth. Samples were collected at 14 different time points (ranging from 0 to 130 min) in three biological replicates after spore inoculation into germination medium. A total of 2191 proteins were identified and categorized based on their expression kinetics. We observed four distinct clusters that were analyzed for functional categories and KEGG pathways annotations. The examination of newly synthesized proteins between successive time points revealed significant changes, particularly within the first 50 min. The dataset provides an information base that can be used for modeling purposes and inspire the design of new experiments.

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发芽和生长期枯草芽孢杆菌 168 的全蛋白质组分析。
本研究对枯草芽孢杆菌 168 trp+(BSB1)萌发和孢子生长过程中的蛋白质组进行了高分辨率数据集和生物信息学分析。在孢子接种到萌发培养基后的 14 个不同时间点(从 0 到 130 分钟不等)收集了三个生物重复的样本。共鉴定出 2191 个蛋白质,并根据其表达动力学进行了分类。我们观察到四个不同的群组,并对其功能类别和 KEGG 通路注释进行了分析。对连续时间点之间新合成的蛋白质进行的研究发现,这些蛋白质发生了显著变化,尤其是在最初的 50 分钟内。该数据集提供了一个信息库,可用于建模目的和启发新实验的设计。
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来源期刊
Proteomics
Proteomics 生物-生化研究方法
CiteScore
6.30
自引率
5.90%
发文量
193
审稿时长
3 months
期刊介绍: PROTEOMICS is the premier international source for information on all aspects of applications and technologies, including software, in proteomics and other "omics". The journal includes but is not limited to proteomics, genomics, transcriptomics, metabolomics and lipidomics, and systems biology approaches. Papers describing novel applications of proteomics and integration of multi-omics data and approaches are especially welcome.
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