Emergence of Multiphase Condensates from a Limited Set of Chemical Building Blocks.

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2024-08-13 Epub Date: 2024-07-30 DOI:10.1021/acs.jctc.4c00323
Fan Chen, William M Jacobs
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Abstract

Biomolecules composed of a limited set of chemical building blocks can colocalize into distinct, spatially segregated compartments known as biomolecular condensates. While many condensates are known to form spontaneously via phase separation, it has been unclear how immiscible condensates with precisely controlled molecular compositions assemble from a small number of chemical building blocks. We address this question by establishing a connection between the specificity of biomolecular interactions and the thermodynamic stability of coexisting condensates. By computing the minimum interaction specificity required to assemble condensates with target molecular compositions, we show how to design heteropolymer mixtures that produce compositionally complex condensates by using only a small number of monomer types. Our results provide insight into how compositional specificity arises in naturally occurring multicomponent condensates and demonstrate a rational algorithm for engineering complex artificial condensates from simple chemical building blocks.

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从有限的化学构件中产生多相凝结物
由有限的化学构件组成的生物大分子可以共聚成不同的、空间隔离的区块,即生物分子凝聚体。众所周知,许多凝聚体是通过相分离自发形成的,但人们一直不清楚,具有精确控制分子组成的不溶凝聚体是如何从少量化学构件中组装而成的。我们通过建立生物分子相互作用特异性与共存凝聚态热力学稳定性之间的联系来解决这个问题。通过计算组装具有目标分子组成的凝聚物所需的最小相互作用特异性,我们展示了如何设计杂聚合物混合物,从而只使用少量单体类型就能产生成分复杂的凝聚物。我们的研究结果让人们深入了解了天然存在的多组分缩聚物中成分特异性是如何产生的,并展示了一种从简单化学构件出发设计复杂人工缩聚物的合理算法。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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