{"title":"SNPgen: A portal of innovative automated tools for genotyping assay design","authors":"","doi":"10.1016/j.simpa.2024.100684","DOIUrl":null,"url":null,"abstract":"<div><p>SNPgen is a web portal that simplifies primer design for the detection of single nucleotide polymorphisms (SNPs) and insertions/deletions (indels). It offers user-friendly tools for automating primer design, retrieve SNP details and generate primers for various genotyping methods such as ARMS-PCR and high-resolution melt (HRM) analysis. SNPgen considers factors such as GC content and melting temperature for optimal primers and allows visualization of amplicons and primers. This user-friendly portal can revolutionize genotyping workflows in various research areas.</p></div>","PeriodicalId":29771,"journal":{"name":"Software Impacts","volume":null,"pages":null},"PeriodicalIF":1.3000,"publicationDate":"2024-07-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2665963824000721/pdfft?md5=3079136a4efddd5dab80646b978fc801&pid=1-s2.0-S2665963824000721-main.pdf","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Software Impacts","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2665963824000721","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"COMPUTER SCIENCE, SOFTWARE ENGINEERING","Score":null,"Total":0}
引用次数: 0
Abstract
SNPgen is a web portal that simplifies primer design for the detection of single nucleotide polymorphisms (SNPs) and insertions/deletions (indels). It offers user-friendly tools for automating primer design, retrieve SNP details and generate primers for various genotyping methods such as ARMS-PCR and high-resolution melt (HRM) analysis. SNPgen considers factors such as GC content and melting temperature for optimal primers and allows visualization of amplicons and primers. This user-friendly portal can revolutionize genotyping workflows in various research areas.
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